Wall clock time and date at job start Mon Mar 30 2020 02:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47959 * 2 1 4 4 O 1.42903 * 109.48052 * 239.97789 * 2 1 3 5 5 C 1.42899 * 114.09693 * 178.84851 * 4 2 1 6 6 C 1.53093 * 109.41776 * 61.15816 * 5 4 2 7 7 C 1.53173 * 109.16070 * 302.39311 * 6 5 4 8 8 H 1.09000 * 109.54271 * 176.93578 * 7 6 5 9 9 O 1.42903 * 109.54352 * 297.10683 * 7 6 5 10 10 C 1.53092 * 109.49134 * 120.03028 * 2 1 3 11 11 H 1.08998 * 109.52530 * 57.68735 * 10 2 1 12 12 C 1.50704 * 109.51940 * 297.50252 * 10 2 1 13 13 H 1.07998 * 120.00085 * 0.31221 * 12 10 2 14 14 C 1.37876 * 119.99736 * 180.31297 * 12 10 2 15 15 N 1.31517 * 120.00054 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00021 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47037 * 59.99989 * 16 14 12 18 18 H 1.48502 * 109.47091 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47386 * 300.00032 * 16 14 12 20 20 H 1.08990 * 109.47088 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47000 * 300.02371 * 1 2 3 22 22 H 1.09000 * 109.46792 * 60.01878 * 1 2 3 23 23 H 1.09002 * 109.47977 * 301.17026 * 5 4 2 24 24 H 1.09008 * 109.49060 * 181.14812 * 5 4 2 25 25 H 1.08998 * 109.52477 * 182.48524 * 6 5 4 26 26 H 1.09002 * 109.52104 * 62.29297 * 6 5 4 27 27 H 0.96700 * 114.00311 * 300.00623 * 9 7 6 28 28 H 0.97005 * 119.99808 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 8 2.0066 -0.6741 -1.1665 5 6 3.4307 -0.7090 -1.2792 6 6 4.0179 -1.4597 -0.0812 7 6 3.5713 -0.7706 1.2119 8 1 3.9409 -1.3315 2.0703 9 8 4.0928 0.5593 1.2495 10 6 2.0408 -0.7223 1.2495 11 1 1.6447 -1.7375 1.2709 12 6 1.5905 0.0214 2.4804 13 1 0.9947 0.9169 2.3826 14 6 1.9392 -0.4414 3.7315 15 7 2.6643 -1.5321 3.8506 16 14 1.3816 0.4808 5.2574 17 1 -0.1022 0.5276 5.2928 18 1 1.8845 -0.2163 6.4684 19 1 1.9198 1.8644 5.2239 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5135 -0.8902 23 1 3.8191 0.3094 -1.2960 24 1 3.7102 -1.2197 -2.2008 25 1 5.1061 -1.4492 -0.1425 26 1 3.6617 -2.4898 -0.0867 27 1 5.0583 0.6042 1.2218 28 1 2.9099 -1.8575 4.7309 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259666319.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:22 Heat of formation + Delta-G solvation = -108.489921 kcal Electronic energy + Delta-G solvation = -12320.483205 eV Core-core repulsion = 10143.103717 eV Total energy + Delta-G solvation = -2177.379488 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.74202 -35.29213 -33.31124 -31.41044 -30.51687 -26.96382 -24.85547 -22.45623 -21.04222 -19.02691 -16.53654 -15.78306 -15.44426 -14.71319 -14.44174 -13.75434 -13.54166 -12.56561 -12.27726 -11.72086 -11.58326 -11.33355 -11.01953 -10.84216 -10.72656 -10.53014 -10.33233 -9.84937 -9.33840 -9.11249 -8.77046 -8.40144 -8.04765 -5.97730 -4.00691 3.34821 3.38307 3.42127 4.44655 4.68627 5.32718 5.48454 5.68543 5.88583 5.90564 6.06493 6.14983 6.27656 6.37161 6.53639 6.68864 6.78295 6.85330 7.03421 7.24980 7.57692 7.66061 7.91734 8.12662 8.44132 8.84696 8.97786 9.61591 11.08931 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.048547 B = 0.016044 C = 0.013623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.616315 B = 1744.754374 C = 2054.878552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.091 3.909 3 H 0.051 0.949 4 O -0.399 6.399 5 C 0.074 3.926 6 C -0.192 4.192 7 C 0.102 3.898 8 H 0.088 0.912 9 O -0.555 6.555 10 C 0.035 3.965 11 H 0.043 0.957 12 C -0.491 4.491 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.899 5.899 16 Si 0.895 3.105 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.277 1.277 20 H 0.052 0.948 21 H 0.076 0.924 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.347 0.653 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 1.105 -5.547 5.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.034 3.966 3 H 0.069 0.931 4 O -0.319 6.319 5 C -0.004 4.004 6 C -0.230 4.230 7 C 0.043 3.957 8 H 0.105 0.895 9 O -0.357 6.357 10 C 0.016 3.984 11 H 0.061 0.939 12 C -0.529 4.529 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.539 5.539 16 Si 0.723 3.277 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.203 1.203 20 H 0.071 0.929 21 H 0.095 0.905 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.189 0.811 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.168 1.054 -5.506 5.727 hybrid contribution 0.721 0.288 1.065 1.318 sum 1.889 1.342 -4.441 5.010 Atomic orbital electron populations 1.21669 0.94389 1.01787 1.00904 1.22246 0.93890 0.95302 0.85112 0.93056 1.87753 1.20170 1.78902 1.45065 1.22259 0.82194 0.98970 0.96934 1.23025 0.99544 1.01235 0.99199 1.22192 0.97809 0.81903 0.93764 0.89462 1.86632 1.22545 1.29272 1.97217 1.19267 0.89602 0.97097 0.92434 0.93871 1.20904 1.32004 1.10069 0.89913 0.92457 1.24911 0.95082 0.94946 0.98974 1.69829 1.38173 1.22440 1.23477 0.86615 0.78890 0.80002 0.82220 1.20332 1.21451 1.20308 0.92879 0.90506 0.94202 0.93749 0.90883 0.92718 0.91284 0.81072 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.34 37.16 0.35 -2.31 15 2 C 0.09 2.08 2.57 -26.68 -0.07 2.01 15 3 H 0.05 1.23 7.82 -51.93 -0.41 0.82 15 4 O -0.40 -8.67 10.41 -35.23 -0.37 -9.04 15 5 C 0.07 1.38 6.69 37.21 0.25 1.63 15 6 C -0.19 -3.75 5.83 -26.59 -0.16 -3.90 15 7 C 0.10 2.41 3.01 -26.55 -0.08 2.33 15 8 H 0.09 2.30 6.18 -51.93 -0.32 1.98 15 9 O -0.55 -12.62 11.83 -35.23 -0.42 -13.03 15 10 C 0.03 0.88 1.65 -91.63 -0.15 0.73 15 11 H 0.04 1.20 8.14 -51.93 -0.42 0.78 15 12 C -0.49 -13.53 7.44 -34.44 -0.26 -13.79 15 13 H 0.06 1.57 6.88 -52.49 -0.36 1.21 15 14 C 0.06 1.70 5.30 -17.82 -0.09 1.60 15 15 N -0.90 -25.64 11.36 55.43 0.63 -25.01 15 16 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 15 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 20 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.08 1.58 6.78 -51.93 -0.35 1.23 15 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.04 0.82 7.82 -51.93 -0.41 0.41 15 24 H 0.07 1.16 8.14 -51.92 -0.42 0.74 15 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 26 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 27 H 0.35 6.18 9.08 45.56 0.41 6.59 15 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 LS Contribution 228.02 15.07 3.44 3.44 Total: -1.00 -29.81 228.02 -5.05 -34.87 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -3.10 Total: 3.89 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -0.21 Total: -11.70 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.63 Total: -25.01 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.78 Total: -22.07 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.81 -5.05 -34.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666319.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.625 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds