Wall clock time and date at job start Mon Mar 30 2020 02:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47959 * 2 1 4 4 O 1.42903 * 109.48052 * 239.97789 * 2 1 3 5 5 C 1.42899 * 114.09693 * 178.84851 * 4 2 1 6 6 C 1.53093 * 109.41776 * 61.15816 * 5 4 2 7 7 C 1.53173 * 109.16070 * 302.39311 * 6 5 4 8 8 H 1.09000 * 109.54271 * 176.93578 * 7 6 5 9 9 O 1.42903 * 109.54352 * 297.10683 * 7 6 5 10 10 C 1.53092 * 109.49134 * 120.03028 * 2 1 3 11 11 H 1.08998 * 109.52530 * 57.68735 * 10 2 1 12 12 C 1.50704 * 109.51940 * 297.50252 * 10 2 1 13 13 H 1.07998 * 120.00085 * 0.31221 * 12 10 2 14 14 C 1.37876 * 119.99736 * 180.31297 * 12 10 2 15 15 N 1.31517 * 120.00054 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00021 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47037 * 59.99989 * 16 14 12 18 18 H 1.48502 * 109.47091 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47386 * 300.00032 * 16 14 12 20 20 H 1.08990 * 109.47088 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47000 * 300.02371 * 1 2 3 22 22 H 1.09000 * 109.46792 * 60.01878 * 1 2 3 23 23 H 1.09002 * 109.47977 * 301.17026 * 5 4 2 24 24 H 1.09008 * 109.49060 * 181.14812 * 5 4 2 25 25 H 1.08998 * 109.52477 * 182.48524 * 6 5 4 26 26 H 1.09002 * 109.52104 * 62.29297 * 6 5 4 27 27 H 0.96700 * 114.00311 * 300.00623 * 9 7 6 28 28 H 0.97005 * 119.99808 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 8 2.0066 -0.6741 -1.1665 5 6 3.4307 -0.7090 -1.2792 6 6 4.0179 -1.4597 -0.0812 7 6 3.5713 -0.7706 1.2119 8 1 3.9409 -1.3315 2.0703 9 8 4.0928 0.5593 1.2495 10 6 2.0408 -0.7223 1.2495 11 1 1.6447 -1.7375 1.2709 12 6 1.5905 0.0214 2.4804 13 1 0.9947 0.9169 2.3826 14 6 1.9392 -0.4414 3.7315 15 7 2.6643 -1.5321 3.8506 16 14 1.3816 0.4808 5.2574 17 1 -0.1022 0.5276 5.2928 18 1 1.8845 -0.2163 6.4684 19 1 1.9198 1.8644 5.2239 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5135 -0.8902 23 1 3.8191 0.3094 -1.2960 24 1 3.7102 -1.2197 -2.2008 25 1 5.1061 -1.4492 -0.1425 26 1 3.6617 -2.4898 -0.0867 27 1 5.0583 0.6042 1.2218 28 1 2.9099 -1.8575 4.7309 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259666319.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:22 Heat of formation + Delta-G solvation = -130.529014 kcal Electronic energy + Delta-G solvation = -12321.438891 eV Core-core repulsion = 10143.103717 eV Total energy + Delta-G solvation = -2178.335175 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.47813 -37.06110 -35.27739 -33.20408 -32.30937 -28.76999 -26.74890 -24.25129 -22.77344 -20.85320 -18.59038 -17.56577 -17.16587 -16.53671 -16.23981 -15.54669 -15.24883 -14.40037 -13.99153 -13.55222 -13.36676 -13.08637 -12.80906 -12.66504 -12.52328 -12.31209 -12.11701 -11.68355 -11.12935 -10.98001 -10.70747 -10.38152 -9.88213 -8.07389 -6.17565 1.41841 1.43840 1.50510 2.44329 3.06466 3.20767 3.80696 4.10894 4.28248 4.31098 4.37390 4.54349 4.62895 4.71203 4.97180 5.06132 5.09808 5.13746 5.31405 5.43830 5.57569 5.70450 5.92052 6.19130 6.56516 6.84679 7.25442 7.47493 8.97101 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.048547 B = 0.016044 C = 0.013623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.616315 B = 1744.754374 C = 2054.878552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.098 3.902 3 H 0.041 0.959 4 O -0.407 6.407 5 C 0.068 3.932 6 C -0.183 4.183 7 C 0.104 3.896 8 H 0.054 0.946 9 O -0.569 6.569 10 C 0.028 3.972 11 H 0.009 0.991 12 C -0.506 4.506 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.953 3.047 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.276 1.276 20 H 0.050 0.950 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.050 0.950 24 H 0.111 0.889 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.369 0.631 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 1.702 -6.291 6.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.041 3.959 3 H 0.059 0.941 4 O -0.327 6.327 5 C -0.008 4.008 6 C -0.221 4.221 7 C 0.045 3.955 8 H 0.072 0.928 9 O -0.374 6.374 10 C 0.010 3.990 11 H 0.027 0.973 12 C -0.544 4.544 13 H 0.071 0.929 14 C -0.184 4.184 15 N -0.563 5.563 16 Si 0.779 3.221 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.202 1.202 20 H 0.069 0.931 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.129 0.871 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.214 0.786 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.462 1.654 -6.264 6.641 hybrid contribution 0.688 0.096 1.266 1.444 sum 2.149 1.750 -4.998 5.715 Atomic orbital electron populations 1.21630 0.92928 1.01944 1.01898 1.22070 0.95208 0.94197 0.84451 0.94131 1.87744 1.22148 1.78673 1.44111 1.22537 0.80551 0.99716 0.98006 1.22908 1.01701 1.00241 0.97271 1.21882 0.96535 0.82195 0.94852 0.92801 1.86558 1.24740 1.28739 1.97314 1.19220 0.91300 0.95206 0.93304 0.97278 1.21184 1.32000 1.10066 0.91134 0.92877 1.25645 0.95296 0.95782 1.01719 1.69971 1.38952 1.23537 1.23883 0.85682 0.78810 0.78668 0.78895 1.19465 1.21063 1.20166 0.93123 0.91190 0.91499 0.93144 0.87131 0.89362 0.92035 0.78566 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 9.34 71.98 0.67 -4.40 15 2 C 0.10 4.40 2.57 30.63 0.08 4.48 15 3 H 0.04 1.91 7.82 -2.38 -0.02 1.89 15 4 O -0.41 -16.93 10.41 -148.98 -1.55 -18.48 15 5 C 0.07 2.37 6.69 72.01 0.48 2.85 15 6 C -0.18 -6.81 5.83 30.68 0.18 -6.63 15 7 C 0.10 4.91 3.01 30.71 0.09 5.00 15 8 H 0.05 2.89 6.18 -2.39 -0.01 2.87 15 9 O -0.57 -25.31 11.83 -148.98 -1.76 -27.07 15 10 C 0.03 1.46 1.65 -11.45 -0.02 1.44 15 11 H 0.01 0.53 8.14 -2.39 -0.02 0.51 15 12 C -0.51 -28.15 7.44 25.60 0.19 -27.96 15 13 H 0.05 2.92 6.88 -2.91 -0.02 2.90 15 14 C 0.01 0.74 5.30 84.65 0.45 1.19 15 15 N -0.92 -53.41 11.36 21.45 0.24 -53.17 15 16 Si 0.95 44.36 29.54 68.60 2.03 46.39 15 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 18 H -0.29 -12.99 7.11 99.48 0.71 -12.29 15 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 20 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 21 H 0.07 2.85 6.78 -2.38 -0.02 2.83 15 22 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.05 1.71 7.82 -2.39 -0.02 1.69 15 24 H 0.11 3.04 8.14 -2.38 -0.02 3.02 15 25 H 0.09 2.68 8.14 -2.39 -0.02 2.66 15 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 15 27 H 0.37 12.51 9.08 -74.06 -0.67 11.84 15 28 H 0.26 14.37 8.31 -92.70 -0.77 13.60 15 Total: -1.00 -63.19 228.02 1.56 -61.63 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.47 Total: 14.73 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 2.13 Total: -24.03 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.24 Total: -53.17 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -3.31 Total: -45.56 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -63.19 1.56 -61.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666319.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.895 kcal (2) G-P(sol) polarization free energy of solvation -63.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds