Wall clock time and date at job start Mon Mar 30 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.48633 * 2 1 4 4 O 1.42907 * 109.47834 * 239.97618 * 2 1 3 5 5 C 1.42905 * 114.09508 * 178.84914 * 4 2 1 6 6 C 1.53086 * 109.41887 * 61.15729 * 5 4 2 7 7 C 1.53175 * 109.16410 * 302.39287 * 6 5 4 8 8 H 1.09005 * 109.53991 * 297.11380 * 7 6 5 9 9 O 1.42897 * 109.54470 * 176.84881 * 7 6 5 10 10 C 1.53097 * 109.49332 * 120.03177 * 2 1 3 11 11 H 1.09000 * 109.51530 * 297.49980 * 10 2 1 12 12 C 1.50692 * 109.52303 * 57.68900 * 10 2 1 13 13 H 1.07998 * 120.00293 * 54.55781 * 12 10 2 14 14 C 1.37880 * 119.99862 * 234.56270 * 12 10 2 15 15 N 1.31512 * 120.00215 * 5.06393 * 14 12 10 16 16 Si 1.86807 * 120.00145 * 185.05816 * 14 12 10 17 17 H 1.48498 * 109.46897 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46790 * 120.00083 * 16 14 12 19 19 H 1.48498 * 109.47480 * 240.00328 * 16 14 12 20 20 H 1.08998 * 109.46851 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46798 * 300.02297 * 1 2 3 22 22 H 1.08994 * 109.47258 * 60.02664 * 1 2 3 23 23 H 1.09001 * 109.48050 * 301.16971 * 5 4 2 24 24 H 1.09007 * 109.49139 * 181.14938 * 5 4 2 25 25 H 1.09000 * 109.52125 * 182.48237 * 6 5 4 26 26 H 1.09007 * 109.57141 * 62.32843 * 6 5 4 27 27 H 0.96697 * 114.00564 * 59.99594 * 9 7 6 28 28 H 0.97002 * 120.00298 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 8 2.0065 -0.6741 -1.1665 5 6 3.4306 -0.7090 -1.2793 6 6 4.0178 -1.4597 -0.0812 7 6 3.5713 -0.7706 1.2119 8 1 3.9690 0.2439 1.2404 9 8 4.0542 -1.5071 2.3373 10 6 2.0408 -0.7223 1.2495 11 1 1.7151 -0.1844 2.1398 12 6 1.4932 -2.1259 1.2790 13 1 1.6422 -2.7816 0.4339 14 6 0.8019 -2.5730 2.3850 15 7 0.5339 -1.7459 3.3717 16 14 0.2459 -4.3538 2.4820 17 1 0.6691 -5.0721 1.2531 18 1 0.8606 -5.0002 3.6692 19 1 -1.2334 -4.4047 2.6011 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5134 -0.8902 23 1 3.8190 0.3093 -1.2961 24 1 3.7101 -1.2198 -2.2008 25 1 5.1060 -1.4492 -0.1426 26 1 3.6626 -2.4902 -0.0863 27 1 5.0174 -1.5836 2.3734 28 1 0.0479 -2.0605 4.1500 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259666323.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:25 Heat of formation + Delta-G solvation = -104.505890 kcal Electronic energy + Delta-G solvation = -12340.221535 eV Core-core repulsion = 10163.014808 eV Total energy + Delta-G solvation = -2177.206727 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.73599 -35.55271 -33.10315 -31.23756 -30.66548 -26.87698 -24.62376 -22.65807 -21.18708 -19.08343 -16.39572 -15.91879 -15.27513 -14.84311 -14.41524 -13.80522 -13.29311 -12.99803 -12.18787 -11.89391 -11.32684 -11.19436 -10.97918 -10.87031 -10.80187 -10.36826 -9.99228 -9.75207 -9.29613 -9.15142 -8.54961 -8.48794 -8.20629 -5.87587 -3.83852 3.39008 3.46717 3.51537 4.55337 4.69940 5.28737 5.43198 5.57205 5.76677 5.84964 6.02242 6.15663 6.19281 6.36183 6.43089 6.50850 6.81405 7.01397 7.08981 7.21132 7.42847 7.66201 8.05253 8.21799 8.51126 8.75497 9.22896 9.76103 11.23746 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.038139 B = 0.018126 C = 0.015688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.985234 B = 1544.401850 C = 1784.397507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.098 3.902 3 H 0.023 0.977 4 O -0.379 6.379 5 C 0.072 3.928 6 C -0.180 4.180 7 C 0.112 3.888 8 H 0.017 0.983 9 O -0.536 6.536 10 C 0.006 3.994 11 H 0.080 0.920 12 C -0.477 4.477 13 H 0.055 0.945 14 C 0.069 3.931 15 N -0.894 5.894 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.287 1.287 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.033 0.967 23 H 0.033 0.967 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.345 0.655 28 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.814 2.660 -5.461 7.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.040 3.960 3 H 0.041 0.959 4 O -0.299 6.299 5 C -0.005 4.005 6 C -0.218 4.218 7 C 0.052 3.948 8 H 0.035 0.965 9 O -0.337 6.337 10 C -0.013 4.013 11 H 0.099 0.901 12 C -0.515 4.515 13 H 0.073 0.927 14 C -0.132 4.132 15 N -0.533 5.533 16 Si 0.715 3.285 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.214 1.214 20 H 0.094 0.906 21 H 0.081 0.919 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.097 0.903 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.188 0.812 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.924 2.538 -5.288 7.057 hybrid contribution 0.672 -0.836 0.218 1.095 sum 4.596 1.702 -5.070 7.051 Atomic orbital electron populations 1.21506 0.93439 1.03492 0.99399 1.22295 0.95255 0.92107 0.86309 0.95908 1.87839 1.19204 1.78648 1.44185 1.22255 0.82869 0.97890 0.97491 1.22858 0.98508 1.03204 0.97270 1.22043 0.98970 0.90115 0.83650 0.96489 1.86884 1.22955 1.77227 1.46650 1.19604 0.88044 0.98599 0.95059 0.90142 1.20695 1.33096 0.96581 1.01176 0.92671 1.24883 0.95622 0.96846 0.95808 1.69885 1.41071 1.34267 1.08102 0.86632 0.77888 0.86087 0.77861 1.19916 1.21254 1.21369 0.90604 0.91872 0.94784 0.94857 0.90311 0.93364 0.89607 0.81213 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.29 37.16 0.35 -2.26 15 2 C 0.10 2.18 2.95 -26.68 -0.08 2.10 15 3 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 4 O -0.38 -8.28 10.06 -35.23 -0.35 -8.63 15 5 C 0.07 1.31 6.84 37.20 0.25 1.57 15 6 C -0.18 -3.47 5.49 -26.60 -0.15 -3.62 15 7 C 0.11 2.46 3.24 -26.55 -0.09 2.37 15 8 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 15 9 O -0.54 -12.33 12.87 -35.23 -0.45 -12.78 15 10 C 0.01 0.15 2.27 -91.64 -0.21 -0.06 15 11 H 0.08 2.28 6.93 -51.93 -0.36 1.92 15 12 C -0.48 -13.23 5.50 -34.44 -0.19 -13.42 15 13 H 0.06 1.58 7.04 -52.49 -0.37 1.21 15 14 C 0.07 1.98 5.45 -17.82 -0.10 1.88 15 15 N -0.89 -26.50 12.62 55.43 0.70 -25.80 15 16 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 15 17 H -0.27 -6.83 7.11 56.52 0.40 -6.43 15 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 15 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 20 H 0.07 1.79 7.15 -51.93 -0.37 1.41 15 21 H 0.06 1.35 8.14 -51.93 -0.42 0.92 15 22 H 0.03 0.63 8.14 -51.93 -0.42 0.20 15 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 24 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 15 26 H 0.09 1.86 6.94 -51.92 -0.36 1.50 15 27 H 0.35 5.89 9.08 45.56 0.41 6.30 15 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 LS Contribution 229.90 15.07 3.46 3.46 Total: -1.00 -31.19 229.90 -5.01 -36.20 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.14 Total: 1.73 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -0.21 Total: -11.43 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.70 Total: -25.80 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.81 Total: -21.41 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -31.19 -5.01 -36.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666323.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.306 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds