Wall clock time and date at job start Mon Mar 30 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.48633 * 2 1 4 4 O 1.42907 * 109.47834 * 239.97618 * 2 1 3 5 5 C 1.42905 * 114.09508 * 178.84914 * 4 2 1 6 6 C 1.53086 * 109.41887 * 61.15729 * 5 4 2 7 7 C 1.53175 * 109.16410 * 302.39287 * 6 5 4 8 8 H 1.09005 * 109.53991 * 297.11380 * 7 6 5 9 9 O 1.42897 * 109.54470 * 176.84881 * 7 6 5 10 10 C 1.53097 * 109.49332 * 120.03177 * 2 1 3 11 11 H 1.09000 * 109.51530 * 297.49980 * 10 2 1 12 12 C 1.50692 * 109.52303 * 57.68900 * 10 2 1 13 13 H 1.07998 * 120.00293 * 54.55781 * 12 10 2 14 14 C 1.37880 * 119.99862 * 234.56270 * 12 10 2 15 15 N 1.31512 * 120.00215 * 5.06393 * 14 12 10 16 16 Si 1.86807 * 120.00145 * 185.05816 * 14 12 10 17 17 H 1.48498 * 109.46897 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46790 * 120.00083 * 16 14 12 19 19 H 1.48498 * 109.47480 * 240.00328 * 16 14 12 20 20 H 1.08998 * 109.46851 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46798 * 300.02297 * 1 2 3 22 22 H 1.08994 * 109.47258 * 60.02664 * 1 2 3 23 23 H 1.09001 * 109.48050 * 301.16971 * 5 4 2 24 24 H 1.09007 * 109.49139 * 181.14938 * 5 4 2 25 25 H 1.09000 * 109.52125 * 182.48237 * 6 5 4 26 26 H 1.09007 * 109.57141 * 62.32843 * 6 5 4 27 27 H 0.96697 * 114.00564 * 59.99594 * 9 7 6 28 28 H 0.97002 * 120.00298 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 8 2.0065 -0.6741 -1.1665 5 6 3.4306 -0.7090 -1.2793 6 6 4.0178 -1.4597 -0.0812 7 6 3.5713 -0.7706 1.2119 8 1 3.9690 0.2439 1.2404 9 8 4.0542 -1.5071 2.3373 10 6 2.0408 -0.7223 1.2495 11 1 1.7151 -0.1844 2.1398 12 6 1.4932 -2.1259 1.2790 13 1 1.6422 -2.7816 0.4339 14 6 0.8019 -2.5730 2.3850 15 7 0.5339 -1.7459 3.3717 16 14 0.2459 -4.3538 2.4820 17 1 0.6691 -5.0721 1.2531 18 1 0.8606 -5.0002 3.6692 19 1 -1.2334 -4.4047 2.6011 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5134 -0.8902 23 1 3.8190 0.3093 -1.2961 24 1 3.7101 -1.2198 -2.2008 25 1 5.1060 -1.4492 -0.1426 26 1 3.6626 -2.4902 -0.0863 27 1 5.0174 -1.5836 2.3734 28 1 0.0479 -2.0605 4.1500 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259666323.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:25 Heat of formation + Delta-G solvation = -128.244089 kcal Electronic energy + Delta-G solvation = -12341.250901 eV Core-core repulsion = 10163.014808 eV Total energy + Delta-G solvation = -2178.236093 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41644 -37.26454 -35.08640 -32.96515 -32.47536 -28.67695 -26.60726 -24.30491 -22.87041 -20.91844 -18.25005 -17.78478 -17.00218 -16.61338 -16.24537 -15.53261 -15.05234 -14.62383 -14.04872 -13.62753 -13.18981 -12.95823 -12.84711 -12.77363 -12.52129 -12.22950 -11.74568 -11.51749 -11.13978 -10.96640 -10.48951 -10.35728 -10.06771 -8.03180 -6.02867 1.38262 1.40727 1.51057 2.48122 3.11615 3.30589 3.71249 4.06864 4.24587 4.28830 4.44414 4.55745 4.64768 4.73712 4.86833 4.95830 5.08746 5.33146 5.40203 5.43762 5.62221 5.69713 5.86628 6.36907 6.65856 7.02395 7.31083 7.58082 9.07999 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.038139 B = 0.018126 C = 0.015688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.985234 B = 1544.401850 C = 1784.397507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.101 3.899 3 H 0.046 0.954 4 O -0.397 6.397 5 C 0.064 3.936 6 C -0.171 4.171 7 C 0.107 3.893 8 H 0.039 0.961 9 O -0.569 6.569 10 C -0.004 4.004 11 H 0.040 0.960 12 C -0.471 4.471 13 H 0.042 0.958 14 C 0.017 3.983 15 N -0.927 5.927 16 Si 0.940 3.060 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.282 1.282 20 H 0.046 0.954 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.371 0.629 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 2.867 -6.864 9.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.043 3.957 3 H 0.064 0.936 4 O -0.316 6.316 5 C -0.012 4.012 6 C -0.209 4.209 7 C 0.048 3.952 8 H 0.056 0.944 9 O -0.374 6.374 10 C -0.023 4.023 11 H 0.059 0.941 12 C -0.509 4.509 13 H 0.060 0.940 14 C -0.180 4.180 15 N -0.568 5.568 16 Si 0.767 3.233 17 H -0.196 1.196 18 H -0.214 1.214 19 H -0.208 1.208 20 H 0.066 0.934 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.125 0.875 25 H 0.107 0.893 26 H 0.073 0.927 27 H 0.217 0.783 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.085 2.739 -6.710 8.853 hybrid contribution 0.398 -0.869 0.616 1.138 sum 5.483 1.870 -6.094 8.408 Atomic orbital electron populations 1.21443 0.93545 1.01925 1.00514 1.22148 0.95402 0.92819 0.85310 0.93633 1.87813 1.21722 1.78790 1.43321 1.22587 0.80848 0.99703 0.98088 1.22752 1.01012 1.01025 0.96141 1.22008 0.96723 0.91609 0.84827 0.94361 1.86811 1.25566 1.77547 1.47453 1.19619 0.90713 0.96972 0.94965 0.94130 1.20832 1.32172 0.97672 1.00257 0.94021 1.25534 0.96413 1.00150 0.95906 1.70011 1.42497 1.35655 1.08675 0.85787 0.77691 0.82163 0.77637 1.19558 1.21355 1.20756 0.93446 0.92648 0.91740 0.92175 0.87464 0.89324 0.92692 0.78334 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.29 71.98 0.67 -4.30 15 2 C 0.10 4.35 2.95 30.63 0.09 4.44 15 3 H 0.05 1.77 8.14 -2.39 -0.02 1.75 15 4 O -0.40 -16.37 10.06 -148.98 -1.50 -17.87 15 5 C 0.06 2.09 6.84 72.01 0.49 2.58 15 6 C -0.17 -6.09 5.49 30.68 0.17 -5.92 15 7 C 0.11 4.54 3.24 30.71 0.10 4.64 15 8 H 0.04 1.46 8.14 -2.38 -0.02 1.44 15 9 O -0.57 -25.60 12.87 -148.98 -1.92 -27.52 15 10 C 0.00 -0.18 2.27 -11.45 -0.03 -0.21 15 11 H 0.04 2.35 6.93 -2.39 -0.02 2.33 15 12 C -0.47 -26.33 5.50 25.60 0.14 -26.19 15 13 H 0.04 2.40 7.04 -2.91 -0.02 2.38 15 14 C 0.02 0.99 5.45 84.66 0.46 1.45 15 15 N -0.93 -56.26 12.62 21.45 0.27 -55.99 15 16 Si 0.94 46.29 29.54 68.60 2.03 48.32 15 17 H -0.27 -13.04 7.11 99.48 0.71 -12.33 15 18 H -0.29 -14.08 7.11 99.48 0.71 -13.38 15 19 H -0.28 -13.48 7.11 99.48 0.71 -12.78 15 20 H 0.05 2.24 7.15 -2.39 -0.02 2.23 15 21 H 0.05 2.38 8.14 -2.38 -0.02 2.36 15 22 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 24 H 0.11 2.88 8.14 -2.38 -0.02 2.86 15 25 H 0.09 2.43 8.14 -2.39 -0.02 2.41 15 26 H 0.05 2.29 6.94 -2.38 -0.02 2.28 15 27 H 0.37 11.92 9.08 -74.06 -0.67 11.25 15 28 H 0.26 14.84 8.31 -92.71 -0.77 14.07 15 Total: -1.00 -67.23 229.90 1.45 -65.78 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.47 Total: 10.78 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 2.10 Total: -23.50 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.27 Total: -55.99 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -3.42 Total: -45.39 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -67.23 1.45 -65.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666323.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.460 kcal (2) G-P(sol) polarization free energy of solvation -67.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds