Wall clock time and date at job start Mon Mar 30 2020 02:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.48186 * 2 1 4 4 O 1.42899 * 109.48528 * 239.97201 * 2 1 3 5 5 C 1.42922 * 114.08119 * 301.16496 * 4 2 1 6 6 C 1.53099 * 109.42406 * 298.84803 * 5 4 2 7 7 C 1.53174 * 109.16006 * 57.60872 * 6 5 4 8 8 H 1.09004 * 109.61647 * 62.93659 * 7 6 5 9 9 O 1.42905 * 109.53984 * 183.15331 * 7 6 5 10 10 C 1.53102 * 109.47913 * 120.01486 * 2 1 3 11 11 H 1.08996 * 109.51974 * 182.34370 * 10 2 1 12 12 C 1.50697 * 109.52199 * 302.47309 * 10 2 1 13 13 H 1.08000 * 120.00363 * 84.92195 * 12 10 2 14 14 C 1.37886 * 119.99409 * 264.91913 * 12 10 2 15 15 N 1.31504 * 120.00527 * 5.75099 * 14 12 10 16 16 Si 1.86801 * 119.99459 * 185.74786 * 14 12 10 17 17 H 1.48498 * 109.47517 * 59.99906 * 16 14 12 18 18 H 1.48503 * 109.47001 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47344 * 300.00062 * 16 14 12 20 20 H 1.08994 * 109.46921 * 300.00746 * 1 2 3 21 21 H 1.09000 * 109.46806 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46738 * 60.00392 * 1 2 3 23 23 H 1.09001 * 109.47604 * 178.86278 * 5 4 2 24 24 H 1.08996 * 109.48958 * 58.83684 * 5 4 2 25 25 H 1.08997 * 109.51809 * 297.70685 * 6 5 4 26 26 H 1.08993 * 109.57406 * 177.55149 * 6 5 4 27 27 H 0.96693 * 114.00281 * 299.55818 * 9 7 6 28 28 H 0.96995 * 120.00418 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 8 2.0067 -0.6741 -1.1663 5 6 1.5646 -2.0286 -1.2786 6 6 2.0765 -2.8322 -0.0802 7 6 1.5757 -2.1811 1.2126 8 1 0.4867 -2.2177 1.2429 9 8 2.1090 -2.8815 2.3383 10 6 2.0406 -0.7220 1.2498 11 1 3.1297 -0.6862 1.2718 12 6 1.4896 -0.0491 2.4805 13 1 0.5111 -0.3177 2.8506 14 6 2.2347 0.9094 3.1341 15 7 3.3750 1.3180 2.6222 16 14 1.6243 1.6276 4.7469 17 1 1.4787 0.5413 5.7489 18 1 2.6000 2.6314 5.2425 19 1 0.3085 2.2814 4.5311 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 1.9532 -2.4626 -2.1999 24 1 0.4751 -2.0554 -1.2954 25 1 3.1664 -2.8400 -0.0857 26 1 1.7047 -3.8550 -0.1407 27 1 1.8543 -3.8134 2.3784 28 1 3.8994 1.9920 3.0822 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259666325.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:27 Heat of formation + Delta-G solvation = -107.844207 kcal Electronic energy + Delta-G solvation = -12265.411152 eV Core-core repulsion = 10088.059665 eV Total energy + Delta-G solvation = -2177.351488 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.99203 -35.68744 -33.27855 -30.93067 -30.84600 -27.20645 -24.83160 -22.17570 -22.01782 -18.38232 -16.68702 -16.45937 -15.22148 -14.95487 -14.41072 -13.88221 -13.27200 -12.77522 -12.42737 -12.37564 -11.74506 -11.26928 -11.04327 -10.89656 -10.76758 -10.52342 -10.25643 -9.69731 -9.33797 -9.07167 -8.74272 -8.65825 -8.24043 -5.98999 -4.00318 3.34753 3.39732 3.43008 4.45604 4.74670 5.15661 5.30670 5.48290 5.65786 5.75021 5.98097 6.07413 6.16043 6.24012 6.32636 6.41628 6.70714 6.78467 6.99180 7.13405 7.42569 7.74202 7.91825 8.07012 8.46230 8.61116 9.06006 9.61744 11.11111 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.048182 B = 0.015258 C = 0.013575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.994338 B = 1834.663670 C = 2062.137730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 H 0.103 0.897 4 O -0.393 6.393 5 C 0.067 3.933 6 C -0.190 4.190 7 C 0.109 3.891 8 H 0.039 0.961 9 O -0.547 6.547 10 C 0.024 3.976 11 H 0.068 0.932 12 C -0.499 4.499 13 H 0.053 0.947 14 C 0.065 3.935 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 H 0.077 0.923 21 H 0.044 0.956 22 H 0.038 0.962 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.350 0.650 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 -5.725 -4.503 8.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.037 3.963 3 H 0.120 0.880 4 O -0.313 6.313 5 C -0.011 4.011 6 C -0.228 4.228 7 C 0.050 3.950 8 H 0.057 0.943 9 O -0.349 6.349 10 C 0.005 3.995 11 H 0.086 0.914 12 C -0.537 4.537 13 H 0.072 0.928 14 C -0.137 4.137 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.095 0.905 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.096 0.904 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.193 0.807 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.918 -4.888 -4.474 7.698 hybrid contribution -0.715 -0.358 0.973 1.259 sum -4.632 -5.246 -3.502 7.825 Atomic orbital electron populations 1.22329 0.98074 1.00798 1.01552 1.22667 0.92204 0.97241 0.84181 0.87967 1.87905 1.74176 1.23383 1.45822 1.22288 0.97884 0.83924 0.96958 1.23034 1.02732 0.98834 0.98182 1.22166 0.95199 0.95245 0.82407 0.94333 1.86787 1.76290 1.24292 1.47519 1.19365 0.99847 0.87117 0.93152 0.91417 1.20777 1.02604 1.20527 1.09759 0.92838 1.24976 0.94867 0.96570 0.97333 1.69934 1.13655 1.30372 1.38882 0.86670 0.78380 0.78666 0.84324 1.20219 1.21341 1.20333 0.90457 0.93696 0.94261 0.90372 0.93825 0.90942 0.92619 0.80692 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.40 8.37 37.16 0.31 -3.09 15 2 C 0.09 2.17 3.46 -26.68 -0.09 2.08 15 3 H 0.10 2.58 8.14 -51.93 -0.42 2.16 15 4 O -0.39 -8.54 10.60 -35.23 -0.37 -8.91 15 5 C 0.07 1.18 6.51 37.21 0.24 1.42 15 6 C -0.19 -3.42 5.77 -26.59 -0.15 -3.58 15 7 C 0.11 2.34 2.64 -26.55 -0.07 2.27 15 8 H 0.04 0.80 6.62 -51.93 -0.34 0.46 15 9 O -0.55 -11.97 13.04 -35.23 -0.46 -12.43 15 10 C 0.02 0.62 1.89 -91.63 -0.17 0.44 15 11 H 0.07 2.01 7.40 -51.93 -0.38 1.62 15 12 C -0.50 -13.75 6.71 -34.44 -0.23 -13.99 15 13 H 0.05 1.46 7.75 -52.49 -0.41 1.05 15 14 C 0.06 1.83 5.45 -17.82 -0.10 1.73 15 15 N -0.89 -26.35 12.85 55.43 0.71 -25.64 15 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 15 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 20 H 0.08 1.62 7.10 -51.93 -0.37 1.25 15 21 H 0.04 0.83 4.98 -51.93 -0.26 0.57 15 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.08 1.17 8.14 -51.93 -0.42 0.74 15 24 H 0.04 0.71 6.34 -51.93 -0.33 0.38 15 25 H 0.07 1.40 8.14 -51.93 -0.42 0.98 15 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 27 H 0.35 5.54 9.09 45.56 0.41 5.95 15 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 226.45 15.07 3.41 3.41 Total: -1.00 -30.84 226.45 -4.92 -35.76 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -2.93 Total: 3.81 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -0.26 Total: -12.71 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.71 Total: -25.64 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.83 Total: -21.34 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -30.84 -4.92 -35.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666325.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.083 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds