Wall clock time and date at job start Mon Mar 30 2020 02:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.48186 * 2 1 4 4 O 1.42899 * 109.48528 * 239.97201 * 2 1 3 5 5 C 1.42922 * 114.08119 * 301.16496 * 4 2 1 6 6 C 1.53099 * 109.42406 * 298.84803 * 5 4 2 7 7 C 1.53174 * 109.16006 * 57.60872 * 6 5 4 8 8 H 1.09004 * 109.61647 * 62.93659 * 7 6 5 9 9 O 1.42905 * 109.53984 * 183.15331 * 7 6 5 10 10 C 1.53102 * 109.47913 * 120.01486 * 2 1 3 11 11 H 1.08996 * 109.51974 * 182.34370 * 10 2 1 12 12 C 1.50697 * 109.52199 * 302.47309 * 10 2 1 13 13 H 1.08000 * 120.00363 * 84.92195 * 12 10 2 14 14 C 1.37886 * 119.99409 * 264.91913 * 12 10 2 15 15 N 1.31504 * 120.00527 * 5.75099 * 14 12 10 16 16 Si 1.86801 * 119.99459 * 185.74786 * 14 12 10 17 17 H 1.48498 * 109.47517 * 59.99906 * 16 14 12 18 18 H 1.48503 * 109.47001 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47344 * 300.00062 * 16 14 12 20 20 H 1.08994 * 109.46921 * 300.00746 * 1 2 3 21 21 H 1.09000 * 109.46806 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46738 * 60.00392 * 1 2 3 23 23 H 1.09001 * 109.47604 * 178.86278 * 5 4 2 24 24 H 1.08996 * 109.48958 * 58.83684 * 5 4 2 25 25 H 1.08997 * 109.51809 * 297.70685 * 6 5 4 26 26 H 1.08993 * 109.57406 * 177.55149 * 6 5 4 27 27 H 0.96693 * 114.00281 * 299.55818 * 9 7 6 28 28 H 0.96995 * 120.00418 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 8 2.0067 -0.6741 -1.1663 5 6 1.5646 -2.0286 -1.2786 6 6 2.0765 -2.8322 -0.0802 7 6 1.5757 -2.1811 1.2126 8 1 0.4867 -2.2177 1.2429 9 8 2.1090 -2.8815 2.3383 10 6 2.0406 -0.7220 1.2498 11 1 3.1297 -0.6862 1.2718 12 6 1.4896 -0.0491 2.4805 13 1 0.5111 -0.3177 2.8506 14 6 2.2347 0.9094 3.1341 15 7 3.3750 1.3180 2.6222 16 14 1.6243 1.6276 4.7469 17 1 1.4787 0.5413 5.7489 18 1 2.6000 2.6314 5.2425 19 1 0.3085 2.2814 4.5311 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 1.9532 -2.4626 -2.1999 24 1 0.4751 -2.0554 -1.2954 25 1 3.1664 -2.8400 -0.0857 26 1 1.7047 -3.8550 -0.1407 27 1 1.8543 -3.8134 2.3784 28 1 3.8994 1.9920 3.0822 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259666325.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:26 Heat of formation + Delta-G solvation = -131.840375 kcal Electronic energy + Delta-G solvation = -12266.451704 eV Core-core repulsion = 10088.059665 eV Total energy + Delta-G solvation = -2178.392039 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.66961 -37.36715 -35.27189 -32.79791 -32.43599 -28.98797 -26.72571 -23.91538 -23.69700 -20.09083 -18.53384 -18.31933 -16.94264 -16.81104 -16.17416 -15.54853 -14.99719 -14.48136 -14.12590 -13.98507 -13.55148 -13.06398 -12.80840 -12.59352 -12.56234 -12.30220 -12.00757 -11.52860 -11.20371 -10.83856 -10.63656 -10.42161 -10.15063 -8.12738 -6.19713 1.39907 1.43354 1.50243 2.43027 3.13855 3.19523 3.65331 4.00752 4.12394 4.25529 4.43895 4.51490 4.60348 4.66874 4.78543 4.94575 5.07902 5.15563 5.32807 5.41986 5.60005 5.63837 5.84906 6.16873 6.60551 6.91807 7.21719 7.45184 8.97647 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.048182 B = 0.015258 C = 0.013575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.994338 B = 1834.663670 C = 2062.137730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 H 0.064 0.936 4 O -0.412 6.412 5 C 0.058 3.942 6 C -0.181 4.181 7 C 0.109 3.891 8 H 0.053 0.947 9 O -0.576 6.576 10 C 0.018 3.982 11 H 0.012 0.988 12 C -0.504 4.504 13 H 0.055 0.945 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.955 3.045 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.264 1.264 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.111 0.889 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.377 0.623 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.248 -7.064 -4.934 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.082 0.918 4 O -0.332 6.332 5 C -0.019 4.019 6 C -0.219 4.219 7 C 0.051 3.949 8 H 0.071 0.929 9 O -0.382 6.382 10 C -0.001 4.001 11 H 0.030 0.970 12 C -0.542 4.542 13 H 0.074 0.926 14 C -0.192 4.192 15 N -0.570 5.570 16 Si 0.780 3.220 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.188 1.188 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.129 0.871 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.119 0.881 27 H 0.224 0.776 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.732 -6.257 -4.913 9.805 hybrid contribution -0.136 -0.037 1.058 1.067 sum -5.868 -6.294 -3.855 9.429 Atomic orbital electron populations 1.22189 0.95168 1.02246 1.01968 1.22264 0.94253 0.95291 0.83894 0.91771 1.87865 1.74883 1.25821 1.44618 1.22673 0.99463 0.81604 0.98122 1.22942 1.01543 1.01094 0.96317 1.22025 0.95771 0.93023 0.84095 0.92909 1.86710 1.76826 1.26673 1.48013 1.19316 0.96471 0.90603 0.93750 0.96974 1.21125 1.02520 1.20096 1.10429 0.92633 1.25814 0.95172 0.97363 1.00811 1.70091 1.15141 1.31344 1.40424 0.85659 0.78325 0.77892 0.80076 1.20017 1.21257 1.18827 0.91866 0.91625 0.92007 0.87065 0.91564 0.92956 0.88079 0.77560 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.03 8.37 71.98 0.60 -5.43 15 2 C 0.10 4.67 3.46 30.63 0.11 4.78 15 3 H 0.06 3.40 8.14 -2.39 -0.02 3.38 15 4 O -0.41 -17.47 10.60 -148.98 -1.58 -19.05 15 5 C 0.06 1.83 6.51 72.02 0.47 2.30 15 6 C -0.18 -6.02 5.77 30.69 0.18 -5.84 15 7 C 0.11 4.54 2.64 30.71 0.08 4.62 15 8 H 0.05 2.04 6.62 -2.39 -0.02 2.02 15 9 O -0.58 -24.50 13.04 -148.98 -1.94 -26.44 15 10 C 0.02 0.92 1.89 -11.45 -0.02 0.90 15 11 H 0.01 0.74 7.40 -2.39 -0.02 0.72 15 12 C -0.50 -28.09 6.71 25.60 0.17 -27.92 15 13 H 0.06 3.01 7.75 -2.91 -0.02 2.98 15 14 C 0.01 0.36 5.45 84.66 0.46 0.82 15 15 N -0.93 -57.21 12.85 21.45 0.28 -56.93 15 16 Si 0.96 45.05 29.54 68.60 2.03 47.08 15 17 H -0.27 -12.77 7.11 99.48 0.71 -12.06 15 18 H -0.29 -13.37 7.11 99.48 0.71 -12.67 15 19 H -0.26 -11.73 7.11 99.48 0.71 -11.02 15 20 H 0.06 2.57 7.10 -2.39 -0.02 2.55 15 21 H 0.06 2.20 4.98 -2.39 -0.01 2.19 15 22 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.11 2.83 8.14 -2.39 -0.02 2.81 15 24 H 0.07 1.83 6.34 -2.39 -0.02 1.82 15 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.10 2.47 8.14 -2.39 -0.02 2.45 15 27 H 0.38 10.99 9.09 -74.06 -0.67 10.32 15 28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 15 Total: -1.00 -68.49 226.45 1.31 -67.18 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.48 Total: 13.94 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 2.05 Total: -25.78 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.28 Total: -56.93 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -3.52 Total: -45.49 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.49 1.31 -67.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666325.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.660 kcal (2) G-P(sol) polarization free energy of solvation -68.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds