Wall clock time and date at job start Mon Mar 30 2020 01:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.29908 * 2 1 4 4 S 1.83451 * 110.33696 * 237.83765 * 2 1 3 5 5 C 1.84400 * 95.39012 * 221.72130 * 4 2 1 6 6 C 1.55236 * 100.50164 * 34.59393 * 5 4 2 7 7 H 1.09003 * 109.53789 * 78.84706 * 6 5 4 8 8 C 1.50699 * 109.50544 * 198.98763 * 6 5 4 9 9 H 1.07989 * 120.00522 * 1.15327 * 8 6 5 10 10 C 1.37880 * 119.99599 * 181.15179 * 8 6 5 11 11 N 1.31522 * 120.00329 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 120.00006 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46906 * 59.99995 * 12 10 8 14 14 H 1.48497 * 109.47277 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47242 * 300.00164 * 12 10 8 16 16 C 1.50526 * 109.17199 * 318.90736 * 6 5 4 17 17 O 1.20758 * 123.32730 * 210.32456 * 16 6 5 18 18 H 1.09003 * 109.46865 * 299.29806 * 1 2 3 19 19 H 1.08993 * 109.47133 * 59.29965 * 1 2 3 20 20 H 1.08995 * 109.46785 * 179.30030 * 1 2 3 21 21 H 1.09005 * 111.22765 * 276.77130 * 5 4 2 22 22 H 1.09002 * 111.23257 * 152.41653 * 5 4 2 23 23 H 0.96996 * 119.99716 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 16 2.1676 -0.9157 -1.4562 5 6 3.5126 -1.7829 -0.5402 6 6 2.8261 -1.9960 0.8357 7 1 2.1438 -2.8440 0.7752 8 6 3.8740 -2.2663 1.8845 9 1 4.9198 -2.2679 1.6151 10 6 3.4975 -2.5115 3.1880 11 7 2.2239 -2.5090 3.5162 12 14 4.7964 -2.8457 4.4882 13 1 5.7059 -1.6763 4.5914 14 1 4.1371 -3.0765 5.7986 15 1 5.5788 -4.0493 4.1083 16 6 2.0561 -0.7554 1.2014 17 8 1.8758 -0.3982 2.3408 18 1 -0.3633 0.5029 0.8962 19 1 -0.3633 0.5246 -0.8836 20 1 -0.3633 -1.0276 -0.0125 21 1 4.3966 -1.1520 -0.4463 22 1 3.7594 -2.7353 -1.0095 23 1 1.9592 -2.6812 4.4333 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259667788.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:21 Heat of formation + Delta-G solvation = -57.343458 kcal Electronic energy + Delta-G solvation = -9722.292608 eV Core-core repulsion = 7854.050773 eV Total energy + Delta-G solvation = -1868.241834 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.14700 -35.57596 -34.29137 -32.62145 -27.35370 -25.98172 -23.69844 -20.20007 -18.77706 -17.26475 -16.89530 -16.41753 -15.90889 -15.15352 -14.68236 -14.36603 -13.83392 -13.43593 -13.07217 -12.81581 -12.72132 -12.67106 -12.26800 -11.92725 -11.63325 -10.82521 -10.57666 -10.01459 -8.69785 -8.16353 -6.28319 0.86911 1.30501 1.39188 1.43745 1.46388 1.50858 2.42147 3.08689 3.41274 3.98355 4.08034 4.19228 4.37836 4.61090 4.74978 4.77214 5.10244 5.19078 5.33262 5.69126 6.03934 6.69143 7.06284 7.39182 8.90824 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.063304 B = 0.014851 C = 0.012751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.204304 B = 1885.005440 C = 2195.458573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.102 4.102 3 H 0.122 0.878 4 S -0.296 6.296 5 C -0.035 4.035 6 C -0.017 4.017 7 H 0.049 0.951 8 C -0.554 4.554 9 H 0.070 0.930 10 C 0.024 3.976 11 N -0.888 5.888 12 Si 0.959 3.041 13 H -0.274 1.274 14 H -0.288 1.288 15 H -0.262 1.262 16 C 0.359 3.641 17 O -0.435 6.435 18 H 0.067 0.933 19 H 0.091 0.909 20 H 0.057 0.943 21 H 0.093 0.907 22 H 0.116 0.884 23 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 2.802 -6.730 7.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.232 4.232 3 H 0.139 0.861 4 S -0.069 6.069 5 C -0.182 4.182 6 C -0.036 4.036 7 H 0.067 0.933 8 C -0.593 4.593 9 H 0.088 0.912 10 C -0.179 4.179 11 N -0.523 5.523 12 Si 0.784 3.216 13 H -0.199 1.199 14 H -0.214 1.214 15 H -0.186 1.186 16 C 0.230 3.770 17 O -0.305 6.305 18 H 0.086 0.914 19 H 0.110 0.890 20 H 0.076 0.924 21 H 0.112 0.888 22 H 0.135 0.865 23 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.689 2.950 -7.158 7.773 hybrid contribution 0.774 -0.213 1.984 2.141 sum 0.085 2.737 -5.174 5.854 Atomic orbital electron populations 1.21545 0.89338 1.03099 1.03437 1.24333 1.01974 1.02295 0.94605 0.86056 1.87285 1.42715 1.58900 1.18017 1.24322 0.96395 1.02690 0.94825 1.19913 0.96079 0.94368 0.93287 0.93298 1.21097 0.92965 1.51911 0.93319 0.91217 1.25787 0.97166 0.94133 1.00857 1.70115 1.16887 1.46376 1.18957 0.85598 0.79086 0.78982 0.77895 1.19914 1.21419 1.18641 1.25612 0.76218 0.86462 0.88714 1.90311 1.48940 1.66492 1.24731 0.91409 0.89041 0.92378 0.88813 0.86548 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.67 9.32 71.98 0.67 -3.00 14 2 C -0.10 -3.76 3.85 30.06 0.12 -3.65 14 3 H 0.12 4.08 8.14 -2.39 -0.02 4.06 14 4 S -0.30 -10.28 22.72 -56.49 -1.28 -11.56 14 5 C -0.03 -1.31 6.86 72.75 0.50 -0.81 14 6 C -0.02 -0.80 2.39 -11.57 -0.03 -0.82 14 7 H 0.05 2.59 8.14 -2.39 -0.02 2.57 14 8 C -0.55 -29.68 8.45 25.60 0.22 -29.46 14 9 H 0.07 3.54 7.75 -2.92 -0.02 3.52 14 10 C 0.02 1.34 4.90 84.65 0.41 1.76 14 11 N -0.89 -52.67 10.97 21.45 0.24 -52.43 14 12 Si 0.96 43.82 29.54 68.60 2.03 45.85 14 13 H -0.27 -12.30 7.11 99.48 0.71 -11.59 14 14 H -0.29 -13.15 7.11 99.48 0.71 -12.44 14 15 H -0.26 -11.26 7.11 99.48 0.71 -10.55 14 16 C 0.36 17.22 6.17 29.25 0.18 17.40 14 17 O -0.43 -24.30 14.76 -1.44 -0.02 -24.32 14 18 H 0.07 2.16 8.14 -2.39 -0.02 2.14 14 19 H 0.09 2.32 8.14 -2.39 -0.02 2.30 14 20 H 0.06 1.94 8.14 -2.39 -0.02 1.92 14 21 H 0.09 3.37 8.10 -2.38 -0.02 3.36 14 22 H 0.12 3.93 8.14 -2.39 -0.02 3.91 14 23 H 0.26 14.85 8.31 -92.71 -0.77 14.08 14 Total: -1.00 -62.00 214.24 4.22 -57.78 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.19 Total: 3.28 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 2.07 Total: -18.59 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.24 Total: -52.43 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.02 Total: -24.32 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -10.28 SS G_CDS: -1.28 Total: -11.56 kcal Total: -62.00 4.22 -57.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259667788.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.435 kcal (2) G-P(sol) polarization free energy of solvation -61.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds