Wall clock time and date at job start Mon Mar 30 2020 01:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08992 * 110.29805 * 2 1 4 4 S 1.83446 * 110.33713 * 122.16077 * 2 1 3 5 5 C 1.84078 * 95.50120 * 99.56366 * 4 2 1 6 6 C 1.55232 * 100.50300 * 34.56728 * 5 4 2 7 7 H 1.09007 * 109.50242 * 78.85208 * 6 5 4 8 8 C 1.50695 * 109.53963 * 198.99027 * 6 5 4 9 9 H 1.08006 * 120.00109 * 5.28363 * 8 6 5 10 10 C 1.37872 * 120.00385 * 185.28116 * 8 6 5 11 11 N 1.31517 * 119.99596 * 8.83253 * 10 8 6 12 12 Si 1.86795 * 120.00206 * 188.83070 * 10 8 6 13 13 H 1.48502 * 109.47218 * 95.00053 * 12 10 8 14 14 H 1.48511 * 109.47102 * 214.99713 * 12 10 8 15 15 H 1.48495 * 109.47371 * 334.99323 * 12 10 8 16 16 C 1.50523 * 109.17396 * 318.93168 * 6 5 4 17 17 O 1.20761 * 123.32711 * 210.32545 * 16 6 5 18 18 H 1.09001 * 109.46854 * 299.29086 * 1 2 3 19 19 H 1.08994 * 109.46814 * 59.29192 * 1 2 3 20 20 H 1.09004 * 109.46510 * 179.29525 * 1 2 3 21 21 H 1.09002 * 111.20662 * 152.38388 * 5 4 2 22 22 H 1.09006 * 111.20578 * 276.75316 * 5 4 2 23 23 H 0.97005 * 119.99841 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 16 2.1676 -0.9156 1.4562 5 6 2.5144 -2.4770 0.5449 6 6 2.9524 -1.9097 -0.8320 7 1 3.9844 -1.5637 -0.7715 8 6 2.8430 -2.9878 -1.8792 9 1 2.4198 -3.9480 -1.6236 10 6 3.2832 -2.7485 -3.1637 11 7 3.9539 -1.6502 -3.4350 12 14 2.9270 -3.9841 -4.5185 13 1 1.6957 -3.5815 -5.2446 14 1 4.0699 -4.0231 -5.4660 15 1 2.7323 -5.3301 -3.9223 16 6 2.0561 -0.7577 -1.1999 17 8 1.7835 -0.4669 -2.3399 18 1 -0.3633 0.5028 0.8963 19 1 -0.3633 0.5248 -0.8835 20 1 -0.3632 -1.0277 -0.0126 21 1 3.3223 -3.0372 1.0157 22 1 1.6160 -3.0873 0.4523 23 1 4.2639 -1.4820 -4.3387 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259667790.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:23 Heat of formation + Delta-G solvation = -45.739311 kcal Electronic energy + Delta-G solvation = -9715.601781 eV Core-core repulsion = 7847.863141 eV Total energy + Delta-G solvation = -1867.738641 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.35417 -33.72846 -32.57909 -30.79953 -25.36850 -24.72089 -21.67305 -18.51783 -16.85716 -15.93446 -14.96670 -14.44636 -14.29783 -13.39494 -12.82236 -12.51946 -12.41186 -11.79468 -11.68637 -10.97814 -10.93699 -10.87661 -10.65073 -10.22252 -9.69229 -9.09517 -8.52566 -8.24659 -7.22680 -6.14401 -4.19104 2.38663 2.89001 3.18931 3.29597 3.36306 3.37584 4.38585 4.87591 5.31105 5.44362 5.56491 5.87185 5.93391 6.02606 6.11379 6.27097 6.42252 6.89094 7.28557 7.76505 8.02274 8.71488 8.84196 9.47232 10.96329 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.060967 B = 0.014615 C = 0.013364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.156106 B = 1915.404683 C = 2094.702194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 H 0.114 0.886 4 S -0.326 6.326 5 C -0.039 4.039 6 C -0.007 4.007 7 H 0.081 0.919 8 C -0.535 4.535 9 H 0.065 0.935 10 C 0.082 3.918 11 N -0.864 5.864 12 Si 0.897 3.103 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.370 3.630 17 O -0.409 6.409 18 H 0.062 0.938 19 H 0.065 0.935 20 H 0.062 0.938 21 H 0.099 0.901 22 H 0.084 0.916 23 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 0.799 5.659 6.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.235 4.235 3 H 0.132 0.868 4 S -0.099 6.099 5 C -0.186 4.186 6 C -0.027 4.027 7 H 0.098 0.902 8 C -0.573 4.573 9 H 0.083 0.917 10 C -0.125 4.125 11 N -0.498 5.498 12 Si 0.724 3.276 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.197 1.197 16 C 0.239 3.761 17 O -0.277 6.277 18 H 0.081 0.919 19 H 0.084 0.916 20 H 0.081 0.919 21 H 0.118 0.882 22 H 0.103 0.897 23 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.622 1.392 6.075 7.209 hybrid contribution -0.261 -0.759 -1.760 1.935 sum -3.882 0.633 4.315 5.839 Atomic orbital electron populations 1.21723 0.91744 1.02822 1.01956 1.24334 0.99834 1.02715 0.96656 0.86844 1.87353 1.84974 1.17926 1.19608 1.24402 1.03872 0.93387 0.96968 1.19924 0.97463 0.93971 0.91297 0.90184 1.20687 1.44369 0.98435 0.93855 0.91690 1.24920 0.93422 0.95385 0.98744 1.69912 1.33820 1.25337 1.20734 0.86510 0.78134 0.81199 0.81743 1.20478 1.21121 1.19719 1.25366 0.78779 0.83957 0.87995 1.90296 1.49787 1.64553 1.23042 0.91917 0.91629 0.91939 0.88229 0.89725 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 9.30 37.16 0.35 -1.67 14 2 C -0.11 -2.01 3.86 -27.56 -0.11 -2.12 14 3 H 0.11 2.04 8.14 -51.93 -0.42 1.62 14 4 S -0.33 -6.04 22.70 -107.50 -2.44 -8.48 14 5 C -0.04 -0.76 6.85 38.34 0.26 -0.50 14 6 C -0.01 -0.16 2.28 -91.83 -0.21 -0.37 14 7 H 0.08 2.09 8.10 -51.93 -0.42 1.67 14 8 C -0.54 -14.29 8.36 -34.44 -0.29 -14.58 14 9 H 0.06 1.68 7.77 -52.48 -0.41 1.27 14 10 C 0.08 2.27 4.68 -17.82 -0.08 2.19 14 11 N -0.86 -25.09 11.99 55.43 0.66 -24.43 14 12 Si 0.90 21.38 29.55 -169.99 -5.02 16.36 14 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 14 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 14 15 H -0.27 -6.28 7.11 56.52 0.40 -5.87 14 16 C 0.37 8.81 6.24 -28.80 -0.18 8.63 14 17 O -0.41 -11.12 15.57 6.00 0.09 -11.02 14 18 H 0.06 0.88 8.14 -51.93 -0.42 0.46 14 19 H 0.06 1.05 8.14 -51.93 -0.42 0.63 14 20 H 0.06 1.04 8.14 -51.93 -0.42 0.61 14 21 H 0.10 1.79 8.14 -51.93 -0.42 1.37 14 22 H 0.08 1.60 8.10 -51.93 -0.42 1.18 14 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 14 LS Contribution 215.67 15.07 3.25 3.25 Total: -1.00 -29.24 215.67 -6.21 -35.45 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -2.50 Total: -2.71 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.26 Total: -8.42 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.66 Total: -24.43 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -6.04 SS G_CDS: -2.44 Total: -8.48 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -29.24 -6.21 -35.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259667790.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.293 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds