Wall clock time and date at job start Mon Mar 30 2020 01:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.29661 * 2 1 4 4 S 1.83453 * 110.33434 * 122.15509 * 2 1 3 5 5 C 1.84074 * 95.50156 * 138.19538 * 4 2 1 6 6 C 1.55240 * 100.50025 * 325.43012 * 5 4 2 7 7 H 1.08998 * 109.53796 * 281.16632 * 6 5 4 8 8 C 1.50703 * 109.53539 * 161.00904 * 6 5 4 9 9 H 1.08001 * 120.00215 * 359.97438 * 8 6 5 10 10 C 1.37878 * 119.99632 * 179.97438 * 8 6 5 11 11 N 1.31509 * 120.00370 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99872 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47213 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47183 * 120.00048 * 12 10 8 15 15 H 1.48503 * 109.47292 * 240.00086 * 12 10 8 16 16 C 1.50524 * 109.17551 * 41.06923 * 6 5 4 17 17 O 1.20755 * 123.32691 * 149.64526 * 16 6 5 18 18 H 1.08993 * 109.47070 * 299.30170 * 1 2 3 19 19 H 1.08997 * 109.46759 * 59.29699 * 1 2 3 20 20 H 1.09000 * 109.47239 * 179.29633 * 1 2 3 21 21 H 1.09008 * 111.20964 * 83.23877 * 5 4 2 22 22 H 1.08993 * 111.21083 * 207.57404 * 5 4 2 23 23 H 0.96996 * 120.00612 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 16 2.1676 -0.9155 1.4563 5 6 3.5096 -1.7850 0.5446 6 6 2.8239 -1.9990 -0.8317 7 1 2.1400 -2.8455 -0.7704 8 6 3.8718 -2.2727 -1.8796 9 1 4.9165 -2.2938 -1.6061 10 6 3.4969 -2.4962 -3.1874 11 7 2.2249 -2.4710 -3.5204 12 14 4.7957 -2.8361 -4.4863 13 1 6.1415 -2.8119 -3.8589 14 1 4.5552 -4.1717 -5.0892 15 1 4.7231 -1.7956 -5.5433 16 6 2.0560 -0.7579 -1.1998 17 8 1.8777 -0.4017 -2.3398 18 1 -0.3633 0.5029 0.8961 19 1 -0.3633 0.5247 -0.8836 20 1 -0.3634 -1.0276 -0.0126 21 1 4.3945 -1.1555 0.4506 22 1 3.7543 -2.7367 1.0162 23 1 1.9611 -2.6278 -4.4405 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259667791.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:24 Heat of formation + Delta-G solvation = -38.721534 kcal Electronic energy + Delta-G solvation = -9727.076364 eV Core-core repulsion = 7859.642037 eV Total energy + Delta-G solvation = -1867.434327 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.24154 -33.61920 -32.54505 -30.84986 -25.39774 -24.37656 -21.91471 -18.36018 -16.86303 -15.53127 -15.05917 -14.57752 -14.06883 -13.57451 -12.87741 -12.57881 -12.05823 -11.82104 -11.52107 -11.01837 -10.94777 -10.85372 -10.56500 -10.18096 -9.67095 -9.04601 -8.49825 -8.15082 -7.19779 -6.08322 -4.14904 2.42488 2.92715 3.25715 3.31970 3.36470 3.39302 4.39299 4.95858 5.32849 5.51203 5.60396 5.91567 5.94454 6.03743 6.14522 6.29125 6.47629 6.95522 7.27200 7.78776 8.05557 8.75611 8.95534 9.49447 10.99572 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.063382 B = 0.014890 C = 0.012765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.656311 B = 1880.027750 C = 2192.946917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 H 0.103 0.897 4 S -0.329 6.329 5 C -0.040 4.040 6 C -0.004 4.004 7 H 0.073 0.927 8 C -0.540 4.540 9 H 0.065 0.935 10 C 0.076 3.924 11 N -0.853 5.853 12 Si 0.898 3.102 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.365 3.635 17 O -0.389 6.389 18 H 0.058 0.942 19 H 0.067 0.933 20 H 0.066 0.934 21 H 0.085 0.915 22 H 0.098 0.902 23 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 2.361 5.594 6.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.235 4.235 3 H 0.121 0.879 4 S -0.102 6.102 5 C -0.187 4.187 6 C -0.024 4.024 7 H 0.090 0.910 8 C -0.578 4.578 9 H 0.083 0.917 10 C -0.131 4.131 11 N -0.487 5.487 12 Si 0.725 3.275 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.233 3.767 17 O -0.256 6.256 18 H 0.077 0.923 19 H 0.086 0.914 20 H 0.085 0.915 21 H 0.103 0.897 22 H 0.116 0.884 23 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.255 2.521 5.987 6.617 hybrid contribution 0.936 -0.082 -1.708 1.950 sum -0.319 2.439 4.279 4.936 Atomic orbital electron populations 1.21525 0.91327 1.03136 1.01824 1.24408 1.00331 1.02061 0.96702 0.87853 1.87339 1.43685 1.59473 1.19739 1.24391 0.96126 1.01158 0.97065 1.19892 0.96523 0.94724 0.91253 0.90959 1.20733 0.92219 1.52749 0.92148 0.91670 1.24962 0.95390 0.94129 0.98595 1.69999 1.15097 1.45039 1.18542 0.86450 0.81686 0.77794 0.81546 1.19644 1.20897 1.20898 1.25290 0.77158 0.86264 0.88035 1.90344 1.47429 1.65245 1.22541 0.92254 0.91405 0.91492 0.89675 0.88355 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 9.32 37.16 0.35 -1.68 14 2 C -0.10 -2.04 3.86 -27.56 -0.11 -2.14 14 3 H 0.10 1.88 8.14 -51.93 -0.42 1.45 14 4 S -0.33 -6.17 22.70 -107.50 -2.44 -8.61 14 5 C -0.04 -0.79 6.85 38.34 0.26 -0.53 14 6 C 0.00 -0.10 2.41 -91.82 -0.22 -0.32 14 7 H 0.07 1.87 8.14 -51.93 -0.42 1.45 14 8 C -0.54 -14.47 8.47 -34.44 -0.29 -14.76 14 9 H 0.07 1.69 7.75 -52.49 -0.41 1.29 14 10 C 0.08 2.12 4.90 -17.82 -0.09 2.03 14 11 N -0.85 -24.76 10.84 55.43 0.60 -24.16 14 12 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 14 13 H -0.27 -6.28 7.11 56.52 0.40 -5.87 14 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 14 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 14 16 C 0.37 8.79 6.16 -28.80 -0.18 8.61 14 17 O -0.39 -10.72 14.63 6.00 0.09 -10.64 14 18 H 0.06 0.86 8.14 -51.93 -0.42 0.44 14 19 H 0.07 1.13 8.14 -51.93 -0.42 0.70 14 20 H 0.07 1.17 8.14 -51.93 -0.42 0.75 14 21 H 0.08 1.63 8.10 -51.92 -0.42 1.21 14 22 H 0.10 1.77 8.14 -51.93 -0.42 1.35 14 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 14 LS Contribution 214.01 15.07 3.23 3.23 Total: -1.00 -29.25 214.01 -6.32 -35.57 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: -2.50 Total: -2.88 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.28 Total: -8.79 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.60 Total: -24.16 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -6.17 SS G_CDS: -2.44 Total: -8.61 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -29.25 -6.32 -35.57 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259667791.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.147 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds