Wall clock time and date at job start Mon Mar 30 2020 01:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.99652 * 2 1 4 4 S 1.84029 * 111.13229 * 235.78903 * 2 1 3 5 5 C 1.83511 * 95.48452 * 206.99806 * 4 2 1 6 6 C 1.53831 * 104.41048 * 19.20952 * 5 4 2 7 7 H 1.08999 * 108.86111 * 242.54330 * 6 5 4 8 8 C 1.50706 * 108.85843 * 124.06764 * 6 5 4 9 9 H 1.08005 * 119.99758 * 0.02562 * 8 6 5 10 10 C 1.37871 * 120.00102 * 180.02562 * 8 6 5 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47483 * 269.99808 * 12 10 8 14 14 H 1.48499 * 109.47134 * 30.00322 * 12 10 8 15 15 H 1.48507 * 109.46904 * 150.00145 * 12 10 8 16 16 C 1.50541 * 112.64596 * 3.23501 * 6 5 4 17 17 O 1.20761 * 125.16186 * 149.23521 * 16 6 5 18 18 H 1.09005 * 109.47116 * 182.75268 * 1 2 3 19 19 H 1.08992 * 109.47079 * 302.75623 * 1 2 3 20 20 H 1.09000 * 109.46986 * 62.75619 * 1 2 3 21 21 H 1.09008 * 110.44661 * 260.47950 * 5 4 2 22 22 H 1.08998 * 110.55294 * 137.99947 * 5 4 2 23 23 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0177 0.0000 4 16 2.1934 -0.9651 -1.4195 5 6 3.7748 -1.4129 -0.6033 6 6 3.5040 -1.2044 0.8966 7 1 4.1685 -0.4250 1.2696 8 6 3.8014 -2.4879 1.6283 9 1 4.1455 -3.3537 1.0820 10 6 3.6344 -2.5568 2.9951 11 7 3.2150 -1.5026 3.6604 12 14 4.0024 -4.1479 3.9020 13 1 2.7740 -4.9804 3.9596 14 1 5.0704 -4.8903 3.1856 15 1 4.4553 -3.8378 5.2819 16 6 2.0809 -0.8024 1.1782 17 8 1.4676 -1.0729 2.1827 18 1 -0.3633 -1.0265 0.0494 19 1 -0.3633 0.5560 0.8642 20 1 -0.3633 0.4704 -0.9137 21 1 4.5767 -0.7560 -0.9404 22 1 4.0274 -2.4542 -0.8035 23 1 3.0235 -0.6765 3.1894 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259667793.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:25 Heat of formation + Delta-G solvation = -33.383466 kcal Electronic energy + Delta-G solvation = -9791.905770 eV Core-core repulsion = 7924.702919 eV Total energy + Delta-G solvation = -1867.202851 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.71636 -33.94036 -32.70890 -30.75449 -24.86060 -24.78456 -21.96590 -18.72964 -16.84809 -16.24950 -15.36882 -14.40118 -14.00865 -13.77867 -13.23568 -12.57047 -12.44109 -11.72694 -11.62791 -11.10005 -10.89076 -10.74327 -10.60093 -10.11430 -9.55963 -8.95259 -8.47348 -8.38423 -7.27423 -6.34440 -4.13951 2.13748 2.73336 3.19850 3.43598 3.47647 3.61450 4.51407 4.72002 5.28349 5.35401 5.50526 5.76271 5.79501 5.90569 6.06091 6.10279 6.39528 6.69700 6.88847 7.86214 8.30257 8.51386 8.80248 9.56478 10.98643 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.058485 B = 0.015553 C = 0.013429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.639559 B = 1799.855646 C = 2084.549776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 H 0.112 0.888 4 S -0.307 6.307 5 C -0.034 4.034 6 C -0.029 4.029 7 H 0.057 0.943 8 C -0.614 4.614 9 H 0.058 0.942 10 C 0.029 3.971 11 N -0.874 5.874 12 Si 1.076 2.924 13 H -0.287 1.287 14 H -0.288 1.288 15 H -0.284 1.284 16 C 0.362 3.638 17 O -0.392 6.392 18 H 0.065 0.935 19 H 0.069 0.931 20 H 0.059 0.941 21 H 0.078 0.922 22 H 0.100 0.900 23 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 2.371 -6.321 6.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.238 4.238 3 H 0.129 0.871 4 S -0.081 6.081 5 C -0.182 4.182 6 C -0.049 4.049 7 H 0.074 0.926 8 C -0.652 4.652 9 H 0.077 0.923 10 C -0.180 4.180 11 N -0.508 5.508 12 Si 0.904 3.096 13 H -0.214 1.214 14 H -0.214 1.214 15 H -0.209 1.209 16 C 0.230 3.770 17 O -0.260 6.260 18 H 0.084 0.916 19 H 0.088 0.912 20 H 0.078 0.922 21 H 0.097 0.903 22 H 0.118 0.882 23 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.861 1.295 -5.387 5.845 hybrid contribution 0.484 1.081 -0.691 1.372 sum -1.377 2.376 -6.078 6.670 Atomic orbital electron populations 1.21442 0.91444 1.03259 1.01799 1.24851 1.00198 1.01767 0.97023 0.87052 1.87446 1.25817 1.69003 1.25787 1.23909 0.93057 1.04687 0.96531 1.19680 0.92297 1.01064 0.91814 0.92592 1.21719 1.52857 0.96036 0.94559 0.92339 1.25828 0.93521 1.03688 0.95009 1.70669 1.37244 1.02727 1.40200 0.83449 0.76370 0.74088 0.75723 1.21359 1.21433 1.20934 1.25934 0.90593 0.75852 0.84636 1.90428 1.62938 1.45941 1.26691 0.91571 0.91169 0.92228 0.90303 0.88161 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 9.14 37.16 0.34 -1.68 14 2 C -0.11 -2.06 3.88 -26.82 -0.10 -2.16 14 3 H 0.11 1.87 8.14 -51.93 -0.42 1.45 14 4 S -0.31 -5.85 22.75 -107.50 -2.45 -8.29 14 5 C -0.03 -0.69 7.02 37.59 0.26 -0.42 14 6 C -0.03 -0.69 2.32 -92.56 -0.21 -0.91 14 7 H 0.06 1.39 8.05 -51.93 -0.42 0.97 14 8 C -0.61 -16.88 8.47 -34.44 -0.29 -17.17 14 9 H 0.06 1.58 7.26 -52.48 -0.38 1.20 14 10 C 0.03 0.83 4.90 -17.82 -0.09 0.74 14 11 N -0.87 -26.49 12.21 55.43 0.68 -25.81 14 12 Si 1.08 25.41 29.90 -169.99 -5.08 20.33 14 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 14 14 H -0.29 -6.38 7.11 56.52 0.40 -5.98 14 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 14 16 C 0.36 8.66 5.87 -28.05 -0.16 8.49 14 17 O -0.39 -10.75 13.46 6.00 0.08 -10.67 14 18 H 0.07 1.18 8.14 -51.93 -0.42 0.76 14 19 H 0.07 1.12 8.14 -51.93 -0.42 0.69 14 20 H 0.06 0.85 8.14 -51.93 -0.42 0.42 14 21 H 0.08 1.37 8.14 -51.92 -0.42 0.95 14 22 H 0.10 2.03 7.31 -51.93 -0.38 1.65 14 23 H 0.27 8.22 5.19 -40.82 -0.21 8.01 14 LS Contribution 209.75 15.07 3.16 3.16 Total: -1.00 -30.63 209.75 -6.17 -36.80 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -2.30 Total: -2.40 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.26 Total: -13.11 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.68 Total: -25.81 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal Atomic # 16 Polarization: -5.85 SS G_CDS: -2.45 Total: -8.29 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -30.63 -6.17 -36.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259667793.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.419 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds