Wall clock time and date at job start Mon Mar 30 2020 01:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.99652 * 2 1 4 4 S 1.84029 * 111.13229 * 235.78903 * 2 1 3 5 5 C 1.83511 * 95.48452 * 206.99806 * 4 2 1 6 6 C 1.53831 * 104.41048 * 19.20952 * 5 4 2 7 7 H 1.08999 * 108.86111 * 242.54330 * 6 5 4 8 8 C 1.50706 * 108.85843 * 124.06764 * 6 5 4 9 9 H 1.08005 * 119.99758 * 0.02562 * 8 6 5 10 10 C 1.37871 * 120.00102 * 180.02562 * 8 6 5 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47483 * 269.99808 * 12 10 8 14 14 H 1.48499 * 109.47134 * 30.00322 * 12 10 8 15 15 H 1.48507 * 109.46904 * 150.00145 * 12 10 8 16 16 C 1.50541 * 112.64596 * 3.23501 * 6 5 4 17 17 O 1.20761 * 125.16186 * 149.23521 * 16 6 5 18 18 H 1.09005 * 109.47116 * 182.75268 * 1 2 3 19 19 H 1.08992 * 109.47079 * 302.75623 * 1 2 3 20 20 H 1.09000 * 109.46986 * 62.75619 * 1 2 3 21 21 H 1.09008 * 110.44661 * 260.47950 * 5 4 2 22 22 H 1.08998 * 110.55294 * 137.99947 * 5 4 2 23 23 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0177 0.0000 4 16 2.1934 -0.9651 -1.4195 5 6 3.7748 -1.4129 -0.6033 6 6 3.5040 -1.2044 0.8966 7 1 4.1685 -0.4250 1.2696 8 6 3.8014 -2.4879 1.6283 9 1 4.1455 -3.3537 1.0820 10 6 3.6344 -2.5568 2.9951 11 7 3.2150 -1.5026 3.6604 12 14 4.0024 -4.1479 3.9020 13 1 2.7740 -4.9804 3.9596 14 1 5.0704 -4.8903 3.1856 15 1 4.4553 -3.8378 5.2819 16 6 2.0809 -0.8024 1.1782 17 8 1.4676 -1.0729 2.1827 18 1 -0.3633 -1.0265 0.0494 19 1 -0.3633 0.5560 0.8642 20 1 -0.3633 0.4704 -0.9137 21 1 4.5767 -0.7560 -0.9404 22 1 4.0274 -2.4542 -0.8035 23 1 3.0235 -0.6765 3.1894 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259667793.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:25 Heat of formation + Delta-G solvation = -52.261313 kcal Electronic energy + Delta-G solvation = -9792.724375 eV Core-core repulsion = 7924.702919 eV Total energy + Delta-G solvation = -1868.021456 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.61945 -35.89966 -34.43864 -32.53622 -26.85410 -26.41934 -23.76563 -20.54808 -18.87326 -17.87369 -17.15729 -16.24002 -15.77602 -15.63060 -14.91287 -14.22990 -14.16164 -13.42756 -13.19433 -12.84298 -12.73099 -12.51570 -12.25443 -11.92408 -11.29472 -10.86102 -10.51292 -10.34915 -8.80655 -8.53373 -6.34324 0.53422 1.08003 1.44762 1.52472 1.61796 1.77108 2.57067 2.97345 3.28988 3.83634 3.91836 4.09468 4.18390 4.39598 4.67829 4.71982 4.97878 5.00061 5.07578 5.81914 6.13923 6.50970 6.74916 7.43128 8.78770 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.058485 B = 0.015553 C = 0.013429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.639559 B = 1799.855646 C = 2084.549776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.099 4.099 3 H 0.140 0.860 4 S -0.284 6.284 5 C -0.032 4.032 6 C -0.043 4.043 7 H 0.047 0.953 8 C -0.627 4.627 9 H 0.057 0.943 10 C -0.022 4.022 11 N -0.905 5.905 12 Si 1.116 2.884 13 H -0.284 1.284 14 H -0.264 1.264 15 H -0.282 1.282 16 C 0.354 3.646 17 O -0.435 6.435 18 H 0.049 0.951 19 H 0.076 0.924 20 H 0.091 0.909 21 H 0.107 0.893 22 H 0.096 0.904 23 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 2.463 -7.674 8.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.229 4.229 3 H 0.158 0.842 4 S -0.058 6.058 5 C -0.179 4.179 6 C -0.063 4.063 7 H 0.064 0.936 8 C -0.664 4.664 9 H 0.075 0.925 10 C -0.225 4.225 11 N -0.542 5.542 12 Si 0.938 3.062 13 H -0.210 1.210 14 H -0.189 1.189 15 H -0.208 1.208 16 C 0.224 3.776 17 O -0.306 6.306 18 H 0.068 0.932 19 H 0.095 0.905 20 H 0.110 0.890 21 H 0.126 0.874 22 H 0.114 0.886 23 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.899 1.395 -6.785 7.183 hybrid contribution 0.514 1.078 -0.338 1.241 sum -1.385 2.473 -7.123 7.666 Atomic orbital electron populations 1.21470 0.89589 1.02774 1.03772 1.24838 1.01758 1.02151 0.94121 0.84246 1.87391 1.24720 1.69050 1.24591 1.23789 0.94853 1.05372 0.93916 1.19798 0.92835 0.99353 0.94300 0.93591 1.22121 1.52000 0.97349 0.94952 0.92514 1.27154 0.93006 1.05684 0.96655 1.70766 1.39716 1.03194 1.40477 0.82948 0.76972 0.71209 0.75039 1.21048 1.18891 1.20808 1.26192 0.90463 0.75709 0.85221 1.90402 1.63771 1.47696 1.28696 0.93190 0.90545 0.88998 0.87411 0.88569 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.63 9.14 71.98 0.66 -2.97 14 2 C -0.10 -3.53 3.88 30.53 0.12 -3.41 14 3 H 0.14 4.22 8.14 -2.38 -0.02 4.20 14 4 S -0.28 -10.02 22.75 -56.49 -1.28 -11.31 14 5 C -0.03 -1.21 7.02 72.26 0.51 -0.70 14 6 C -0.04 -2.06 2.32 -12.05 -0.03 -2.09 14 7 H 0.05 2.29 8.05 -2.39 -0.02 2.27 14 8 C -0.63 -34.49 8.47 25.60 0.22 -34.28 14 9 H 0.06 3.05 7.26 -2.91 -0.02 3.03 14 10 C -0.02 -1.25 4.90 84.65 0.41 -0.83 14 11 N -0.91 -55.91 12.21 21.45 0.26 -55.65 14 12 Si 1.12 51.12 29.90 68.60 2.05 53.17 14 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 14 14 H -0.26 -10.94 7.11 99.48 0.71 -10.24 14 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 14 16 C 0.35 16.76 5.87 29.74 0.17 16.94 14 17 O -0.43 -24.17 13.46 -1.45 -0.02 -24.19 14 18 H 0.05 1.70 8.14 -2.38 -0.02 1.68 14 19 H 0.08 2.27 8.14 -2.39 -0.02 2.25 14 20 H 0.09 2.25 8.14 -2.39 -0.02 2.23 14 21 H 0.11 3.46 8.14 -2.38 -0.02 3.44 14 22 H 0.10 3.74 7.31 -2.39 -0.02 3.72 14 23 H 0.26 16.28 5.19 -92.71 -0.48 15.80 14 Total: -1.00 -65.61 209.75 4.56 -61.06 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.48 Total: 4.25 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 2.06 Total: -27.33 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.26 Total: -55.65 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.02 Total: -24.19 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.17 kcal Atomic # 16 Polarization: -10.02 SS G_CDS: -1.28 Total: -11.31 kcal Total: -65.61 4.56 -61.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259667793.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.796 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds