Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.48849 * 2 1 4 4 C 1.53100 * 109.47571 * 239.97235 * 2 1 3 5 5 C 1.53311 * 109.19441 * 297.62406 * 4 2 1 6 6 H 1.09002 * 109.52711 * 62.87886 * 5 4 2 7 7 O 1.42900 * 109.62215 * 183.18447 * 5 4 2 8 8 C 1.53177 * 108.96735 * 303.05955 * 5 4 2 9 9 H 1.09002 * 109.52487 * 297.01638 * 8 5 4 10 10 C 1.50697 * 109.52117 * 176.88985 * 8 5 4 11 11 H 1.08007 * 120.00129 * 0.13194 * 10 8 5 12 12 C 1.37879 * 119.99978 * 180.12586 * 10 8 5 13 13 N 1.31513 * 119.99905 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99776 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47238 * 60.00209 * 14 12 10 16 16 H 1.48502 * 109.46812 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47547 * 300.00176 * 14 12 10 18 18 C 1.53098 * 109.21356 * 56.95427 * 8 5 4 19 19 O 1.42899 * 109.41440 * 302.35638 * 18 8 5 20 20 H 1.08995 * 109.46974 * 299.97115 * 1 2 3 21 21 H 1.08998 * 109.46867 * 59.96774 * 1 2 3 22 22 H 1.08994 * 109.47313 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.52355 * 57.53561 * 4 2 1 24 24 H 1.08999 * 109.51737 * 177.65906 * 4 2 1 25 25 H 0.96695 * 114.00235 * 299.52121 * 7 5 4 26 26 H 0.97006 * 119.99752 * 180.02562 * 13 12 10 27 27 H 1.08999 * 109.47859 * 62.34349 * 18 8 5 28 28 H 1.09000 * 109.47836 * 182.37389 * 18 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2497 5 6 1.5756 -2.1828 -1.2129 6 1 0.4866 -2.2193 -1.2415 7 8 2.1089 -2.8846 -2.3377 8 6 2.0764 -2.8323 0.0808 9 1 3.1664 -2.8401 0.0863 10 6 1.5622 -4.2462 0.1662 11 1 0.9421 -4.6440 -0.6236 12 6 1.8835 -5.0322 1.2525 13 7 2.6382 -4.5477 2.2144 14 14 1.2466 -6.7851 1.3580 15 1 1.7419 -7.5626 0.1937 16 1 1.7296 -7.4124 2.6144 17 1 -0.2383 -6.7737 1.3501 18 6 1.5645 -2.0284 1.2790 19 8 2.0066 -0.6742 1.1664 20 1 -0.3633 0.5134 0.8902 21 1 -0.3633 0.5143 -0.8897 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6421 -0.2358 -2.1399 24 1 3.1297 -0.6865 -1.2716 25 1 1.8322 -2.5263 -3.1922 26 1 2.8645 -5.1008 2.9785 27 1 0.4749 -2.0550 1.2958 28 1 1.9530 -2.4622 2.2004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259692532.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = -108.617506 kcal Electronic energy + Delta-G solvation = -12199.256982 eV Core-core repulsion = 10021.871962 eV Total energy + Delta-G solvation = -2177.385020 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.99788 -35.73663 -33.31857 -31.68643 -30.12276 -27.28036 -24.86291 -22.78843 -21.42324 -18.38573 -16.71228 -16.49209 -15.24531 -15.16793 -14.37993 -13.83547 -13.33776 -12.97224 -12.44101 -12.01229 -11.77432 -11.73736 -11.01420 -10.93442 -10.77240 -10.42556 -10.31121 -10.09035 -9.34574 -9.05943 -8.82517 -8.53727 -8.25295 -6.01574 -4.04860 3.33554 3.37894 3.41267 4.43141 4.78378 5.09201 5.33515 5.35408 5.55434 5.61640 5.78011 5.91291 6.03000 6.21793 6.28200 6.51233 6.67955 6.73793 6.82529 7.08506 7.61177 7.73659 7.94474 8.16933 8.47084 8.55358 8.97713 9.58309 11.06334 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.050127 B = 0.014318 C = 0.012552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.443525 B = 1955.086368 C = 2230.250642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.091 3.909 3 H 0.086 0.914 4 C -0.182 4.182 5 C 0.109 3.891 6 H 0.043 0.957 7 O -0.553 6.553 8 C 0.027 3.973 9 H 0.040 0.960 10 C -0.502 4.502 11 H 0.059 0.941 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.897 3.103 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.063 3.937 19 O -0.393 6.393 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.352 0.648 26 H 0.263 0.737 27 H 0.030 0.970 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 6.742 -4.621 8.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.033 3.967 3 H 0.104 0.896 4 C -0.220 4.220 5 C 0.051 3.949 6 H 0.061 0.939 7 O -0.355 6.355 8 C 0.008 3.992 9 H 0.058 0.942 10 C -0.541 4.541 11 H 0.077 0.923 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.012 4.012 19 O -0.312 6.312 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.196 0.804 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.264 6.398 -3.813 8.132 hybrid contribution -0.767 -0.719 -0.619 1.220 sum -4.031 5.679 -4.432 8.255 Atomic orbital electron populations 1.22470 0.97354 1.03125 1.01447 1.21898 0.92808 0.95749 0.86294 0.89617 1.23001 1.02337 0.98597 0.98027 1.22167 0.95672 0.88466 0.88632 0.93873 1.86742 1.75112 1.58478 1.15163 1.19286 0.98022 0.94540 0.87372 0.94167 1.20992 1.31428 0.96486 1.05144 0.92288 1.25019 0.95013 0.98529 0.95795 1.69825 1.37056 1.36774 1.09830 0.86573 0.79073 0.84588 0.77286 1.20223 1.21256 1.20319 1.23116 0.96945 0.77871 1.03287 1.87933 1.74018 1.27746 1.41522 0.92343 0.92548 0.91231 0.92532 0.91031 0.80413 0.92704 0.95172 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.96 8.65 37.16 0.32 -2.64 15 2 C 0.09 1.64 3.91 -26.68 -0.10 1.54 15 3 H 0.09 1.34 8.14 -51.93 -0.42 0.91 15 4 C -0.18 -3.28 5.28 -26.52 -0.14 -3.42 15 5 C 0.11 2.35 2.61 -26.48 -0.07 2.28 15 6 H 0.04 0.91 6.62 -51.93 -0.34 0.56 15 7 O -0.55 -11.75 13.04 -35.23 -0.46 -12.21 15 8 C 0.03 0.69 2.02 -91.63 -0.19 0.51 15 9 H 0.04 1.19 8.14 -51.93 -0.42 0.77 15 10 C -0.50 -14.21 8.30 -34.44 -0.29 -14.49 15 11 H 0.06 1.67 7.75 -52.48 -0.41 1.27 15 12 C 0.06 1.61 5.31 -17.82 -0.09 1.52 15 13 N -0.90 -25.96 11.36 55.43 0.63 -25.33 15 14 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 15 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 18 C 0.06 1.56 5.54 37.21 0.21 1.77 15 19 O -0.39 -8.84 10.60 -35.23 -0.37 -9.21 15 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.07 1.22 4.98 -51.93 -0.26 0.97 15 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.07 1.37 8.14 -51.93 -0.42 0.94 15 25 H 0.35 5.38 9.09 45.56 0.41 5.79 15 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 27 H 0.03 0.71 6.34 -51.93 -0.33 0.38 15 28 H 0.13 3.43 6.15 -51.93 -0.32 3.11 15 LS Contribution 225.56 15.07 3.40 3.40 Total: -1.00 -30.65 225.56 -5.09 -35.74 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -2.91 Total: 3.89 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.35 Total: -12.94 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.63 Total: -25.33 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.83 Total: -21.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -30.65 -5.09 -35.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692532.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.881 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds