Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.48849 * 2 1 4 4 C 1.53100 * 109.47571 * 239.97235 * 2 1 3 5 5 C 1.53311 * 109.19441 * 297.62406 * 4 2 1 6 6 H 1.09002 * 109.52711 * 62.87886 * 5 4 2 7 7 O 1.42900 * 109.62215 * 183.18447 * 5 4 2 8 8 C 1.53177 * 108.96735 * 303.05955 * 5 4 2 9 9 H 1.09002 * 109.52487 * 297.01638 * 8 5 4 10 10 C 1.50697 * 109.52117 * 176.88985 * 8 5 4 11 11 H 1.08007 * 120.00129 * 0.13194 * 10 8 5 12 12 C 1.37879 * 119.99978 * 180.12586 * 10 8 5 13 13 N 1.31513 * 119.99905 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99776 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47238 * 60.00209 * 14 12 10 16 16 H 1.48502 * 109.46812 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47547 * 300.00176 * 14 12 10 18 18 C 1.53098 * 109.21356 * 56.95427 * 8 5 4 19 19 O 1.42899 * 109.41440 * 302.35638 * 18 8 5 20 20 H 1.08995 * 109.46974 * 299.97115 * 1 2 3 21 21 H 1.08998 * 109.46867 * 59.96774 * 1 2 3 22 22 H 1.08994 * 109.47313 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.52355 * 57.53561 * 4 2 1 24 24 H 1.08999 * 109.51737 * 177.65906 * 4 2 1 25 25 H 0.96695 * 114.00235 * 299.52121 * 7 5 4 26 26 H 0.97006 * 119.99752 * 180.02562 * 13 12 10 27 27 H 1.08999 * 109.47859 * 62.34349 * 18 8 5 28 28 H 1.09000 * 109.47836 * 182.37389 * 18 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2497 5 6 1.5756 -2.1828 -1.2129 6 1 0.4866 -2.2193 -1.2415 7 8 2.1089 -2.8846 -2.3377 8 6 2.0764 -2.8323 0.0808 9 1 3.1664 -2.8401 0.0863 10 6 1.5622 -4.2462 0.1662 11 1 0.9421 -4.6440 -0.6236 12 6 1.8835 -5.0322 1.2525 13 7 2.6382 -4.5477 2.2144 14 14 1.2466 -6.7851 1.3580 15 1 1.7419 -7.5626 0.1937 16 1 1.7296 -7.4124 2.6144 17 1 -0.2383 -6.7737 1.3501 18 6 1.5645 -2.0284 1.2790 19 8 2.0066 -0.6742 1.1664 20 1 -0.3633 0.5134 0.8902 21 1 -0.3633 0.5143 -0.8897 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6421 -0.2358 -2.1399 24 1 3.1297 -0.6865 -1.2716 25 1 1.8322 -2.5263 -3.1922 26 1 2.8645 -5.1008 2.9785 27 1 0.4749 -2.0550 1.2958 28 1 1.9530 -2.4622 2.2004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259692532.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = -132.271282 kcal Electronic energy + Delta-G solvation = -12200.282687 eV Core-core repulsion = 10021.871962 eV Total energy + Delta-G solvation = -2178.410725 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.67148 -37.41060 -35.36660 -33.24551 -32.07298 -28.75978 -26.90314 -24.52089 -23.15319 -20.08108 -18.58056 -18.35295 -17.03843 -16.84732 -16.21796 -15.43722 -15.09493 -14.68369 -14.06115 -13.80786 -13.46119 -13.20032 -12.84776 -12.66758 -12.49998 -12.28280 -12.05975 -11.81407 -11.19498 -10.91279 -10.66301 -10.37566 -10.19929 -8.15339 -6.27625 1.40197 1.42642 1.50748 2.40938 3.07379 3.21809 3.63391 3.92198 4.09659 4.16344 4.36230 4.44514 4.61623 4.69191 4.79753 4.97847 5.00668 5.16237 5.26294 5.38075 5.53173 5.72901 5.84934 6.18689 6.59332 6.82189 7.13769 7.40260 8.91252 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.050127 B = 0.014318 C = 0.012552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.443525 B = 1955.086368 C = 2230.250642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.078 3.922 3 H 0.118 0.882 4 C -0.172 4.172 5 C 0.113 3.887 6 H 0.053 0.947 7 O -0.577 6.577 8 C 0.021 3.979 9 H -0.010 1.010 10 C -0.524 4.524 11 H 0.053 0.947 12 C 0.008 3.992 13 N -0.922 5.922 14 Si 0.962 3.038 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.265 1.265 18 C 0.081 3.919 19 O -0.412 6.412 20 H 0.065 0.935 21 H 0.092 0.908 22 H 0.047 0.953 23 H 0.103 0.897 24 H 0.055 0.945 25 H 0.380 0.620 26 H 0.264 0.736 27 H 0.037 0.963 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 7.507 -5.765 10.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.020 3.980 3 H 0.136 0.864 4 C -0.210 4.210 5 C 0.054 3.946 6 H 0.070 0.930 7 O -0.383 6.383 8 C 0.002 3.998 9 H 0.008 0.992 10 C -0.562 4.562 11 H 0.072 0.928 12 C -0.191 4.191 13 N -0.562 5.562 14 Si 0.787 3.213 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.190 1.190 18 C 0.005 3.995 19 O -0.332 6.332 20 H 0.084 0.916 21 H 0.111 0.889 22 H 0.066 0.934 23 H 0.121 0.879 24 H 0.074 0.926 25 H 0.228 0.772 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.557 7.186 -4.984 9.861 hybrid contribution -0.331 -0.894 -0.321 1.006 sum -4.887 6.293 -5.305 9.572 Atomic orbital electron populations 1.22411 0.95314 1.02351 1.03666 1.22354 0.94617 0.96555 0.84434 0.86402 1.22915 1.01521 0.96415 1.00139 1.21960 0.95877 0.90027 0.86704 0.92959 1.86661 1.75544 1.59453 1.16691 1.19237 0.94900 0.94729 0.90925 0.99191 1.21292 1.31724 0.98006 1.05180 0.92831 1.25856 0.95142 1.02681 0.95389 1.69980 1.37836 1.38164 1.10218 0.85555 0.79034 0.79453 0.77302 1.20094 1.20609 1.19024 1.22608 0.96770 0.78999 1.01131 1.87880 1.74743 1.26457 1.44103 0.91636 0.88912 0.93391 0.87882 0.92587 0.77207 0.92653 0.94504 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.11 8.65 71.98 0.62 -4.48 15 2 C 0.08 2.59 3.91 30.63 0.12 2.71 15 3 H 0.12 3.21 8.14 -2.39 -0.02 3.19 15 4 C -0.17 -5.78 5.28 30.73 0.16 -5.61 15 5 C 0.11 4.74 2.61 30.76 0.08 4.82 15 6 H 0.05 2.10 6.62 -2.39 -0.02 2.09 15 7 O -0.58 -23.89 13.04 -148.98 -1.94 -25.83 15 8 C 0.02 1.12 2.02 -11.45 -0.02 1.09 15 9 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 15 10 C -0.52 -30.20 8.30 25.60 0.21 -29.98 15 11 H 0.05 3.06 7.75 -2.91 -0.02 3.04 15 12 C 0.01 0.43 5.31 84.66 0.45 0.88 15 13 N -0.92 -55.01 11.36 21.45 0.24 -54.76 15 14 Si 0.96 44.76 29.54 68.60 2.03 46.78 15 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 17 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 18 C 0.08 4.10 5.54 72.01 0.40 4.50 15 19 O -0.41 -18.46 10.60 -148.98 -1.58 -20.04 15 20 H 0.06 1.76 8.14 -2.39 -0.02 1.74 15 21 H 0.09 1.96 8.14 -2.39 -0.02 1.94 15 22 H 0.05 1.57 4.98 -2.39 -0.01 1.56 15 23 H 0.10 2.53 8.14 -2.39 -0.02 2.51 15 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 25 H 0.38 10.64 9.09 -74.06 -0.67 9.96 15 26 H 0.26 14.92 8.31 -92.70 -0.77 14.15 15 27 H 0.04 1.77 6.34 -2.39 -0.02 1.76 15 28 H 0.09 5.13 6.15 -2.39 -0.01 5.12 15 Total: -1.00 -67.76 225.56 1.25 -66.51 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.48 Total: 13.42 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 2.02 Total: -26.08 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.24 Total: -54.76 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -3.52 Total: -45.87 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -67.76 1.25 -66.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692532.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.765 kcal (2) G-P(sol) polarization free energy of solvation -67.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds