Wall clock time and date at job start Mon Mar 30 2020 02:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.48052 * 2 1 4 4 C 1.53089 * 109.48512 * 239.97070 * 2 1 3 5 5 C 1.53183 * 109.16135 * 182.40013 * 4 2 1 6 6 H 1.08993 * 109.54521 * 297.12059 * 5 4 2 7 7 O 1.42902 * 109.54568 * 176.84598 * 5 4 2 8 8 C 1.53185 * 109.03189 * 56.98342 * 5 4 2 9 9 H 1.09002 * 109.52380 * 62.92419 * 8 5 4 10 10 C 1.50699 * 109.57270 * 183.08496 * 8 5 4 11 11 H 1.08001 * 120.00160 * 359.83429 * 10 8 5 12 12 C 1.37873 * 119.99966 * 179.84435 * 10 8 5 13 13 N 1.31515 * 120.00115 * 359.97438 * 12 10 8 14 14 Si 1.86806 * 120.00267 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47000 * 89.99779 * 14 12 10 16 16 H 1.48501 * 109.47253 * 210.00175 * 14 12 10 17 17 H 1.48500 * 109.46685 * 329.99894 * 14 12 10 18 18 C 1.53095 * 109.16151 * 303.01957 * 8 5 4 19 19 O 1.42896 * 109.47916 * 120.02465 * 2 1 3 20 20 H 1.09006 * 109.46810 * 299.97617 * 1 2 3 21 21 H 1.09001 * 109.47310 * 59.97218 * 1 2 3 22 22 H 1.09000 * 109.47304 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.52588 * 302.30559 * 4 2 1 24 24 H 1.08999 * 109.52597 * 62.44158 * 4 2 1 25 25 H 0.96701 * 113.99643 * 60.44687 * 7 5 4 26 26 H 0.97006 * 120.00305 * 180.02562 * 13 12 10 27 27 H 1.08999 * 109.47454 * 177.59454 * 18 8 5 28 28 H 1.08998 * 109.47991 * 297.61350 * 18 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7222 -1.2495 5 6 3.5713 -0.7706 -1.2120 6 1 3.9690 0.2438 -1.2406 7 8 4.0540 -1.5071 -2.3375 8 6 4.0178 -1.4598 0.0811 9 1 3.6616 -2.4899 0.0866 10 6 5.5223 -1.4466 0.1667 11 1 6.1042 -0.9947 -0.6231 12 6 6.1560 -2.0115 1.2530 13 7 5.4474 -2.5615 2.2149 14 14 8.0210 -1.9959 1.3588 15 1 8.4669 -0.7620 2.0544 16 1 8.4838 -3.1862 2.1166 17 1 8.5946 -2.0270 -0.0105 18 6 3.4306 -0.7090 1.2792 19 8 2.0065 -0.6741 1.1664 20 1 -0.3633 0.5135 0.8903 21 1 -0.3634 0.5143 -0.8897 22 1 -0.3634 -1.0276 -0.0005 23 1 1.6446 -1.7374 -1.2709 24 1 1.7141 -0.1850 -2.1399 25 1 3.8077 -1.1265 -3.1916 26 1 5.8932 -2.9587 2.9794 27 1 3.7100 -1.2200 2.2006 28 1 3.8192 0.3092 1.2961 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259692534.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:02 Heat of formation + Delta-G solvation = -135.736254 kcal Electronic energy + Delta-G solvation = -12039.639747 eV Core-core repulsion = 9861.078770 eV Total energy + Delta-G solvation = -2178.560977 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.44162 -37.43039 -35.43952 -33.40871 -32.32808 -28.77728 -26.49854 -24.54571 -22.66250 -21.05877 -18.61105 -18.07644 -17.09725 -16.87502 -15.92225 -15.89777 -15.13829 -14.34785 -13.91245 -13.87904 -13.32289 -13.27581 -12.85821 -12.79365 -12.61993 -12.28482 -11.97024 -11.83156 -11.20191 -10.96431 -10.72273 -10.51189 -10.21539 -8.16519 -6.28957 1.40090 1.41435 1.52768 2.40587 3.02571 3.15971 3.56622 3.92213 4.07818 4.12886 4.39329 4.49818 4.58770 4.70035 4.88766 4.91109 4.95542 5.14007 5.24347 5.33541 5.51131 5.69259 5.83306 6.16931 6.58043 6.80814 7.11848 7.39177 8.90397 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056230 B = 0.013136 C = 0.011199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.833213 B = 2130.959278 C = 2499.721371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.075 3.925 3 H 0.060 0.940 4 C -0.169 4.169 5 C 0.111 3.889 6 H 0.047 0.953 7 O -0.575 6.575 8 C 0.021 3.979 9 H -0.007 1.007 10 C -0.525 4.525 11 H 0.054 0.946 12 C 0.008 3.992 13 N -0.922 5.922 14 Si 0.964 3.036 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.082 3.918 19 O -0.412 6.412 20 H 0.065 0.935 21 H 0.098 0.902 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.103 0.897 25 H 0.381 0.619 26 H 0.265 0.735 27 H 0.094 0.906 28 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.455 6.413 -5.774 10.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.017 3.983 3 H 0.078 0.922 4 C -0.207 4.207 5 C 0.053 3.947 6 H 0.065 0.935 7 O -0.381 6.381 8 C 0.002 3.998 9 H 0.011 0.989 10 C -0.563 4.563 11 H 0.072 0.928 12 C -0.191 4.191 13 N -0.562 5.562 14 Si 0.789 3.211 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.196 1.196 18 C 0.006 3.994 19 O -0.332 6.332 20 H 0.084 0.916 21 H 0.116 0.884 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.121 0.879 25 H 0.228 0.772 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.316 5.861 -5.001 9.962 hybrid contribution 1.033 0.070 -0.289 1.075 sum -5.282 5.930 -5.290 9.542 Atomic orbital electron populations 1.21755 0.91008 1.02796 1.03589 1.22285 0.96606 0.94814 0.84595 0.92232 1.22918 0.95988 1.01818 1.00004 1.21915 0.92086 0.93852 0.86892 0.93468 1.86665 1.79353 1.55484 1.16622 1.19241 0.95543 0.94280 0.90748 0.98881 1.21319 0.91933 1.37771 1.05280 0.92811 1.25865 1.03370 0.94477 0.95346 1.69981 1.36994 1.39032 1.10206 0.85464 0.79609 0.77918 0.78134 1.19374 1.20730 1.19620 1.22623 0.77579 0.97731 1.01477 1.87835 1.22988 1.78467 1.43915 0.91623 0.88371 0.92651 0.92387 0.87892 0.77152 0.92613 0.88809 0.95213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.56 71.98 0.69 -2.76 15 2 C 0.07 2.56 3.26 30.63 0.10 2.66 15 3 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 4 C -0.17 -5.77 5.05 30.69 0.15 -5.61 15 5 C 0.11 4.74 2.91 30.72 0.09 4.83 15 6 H 0.05 1.94 8.14 -2.39 -0.02 1.92 15 7 O -0.57 -23.88 13.04 -148.98 -1.94 -25.83 15 8 C 0.02 1.11 2.02 -11.45 -0.02 1.09 15 9 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 15 10 C -0.53 -30.40 8.30 25.60 0.21 -30.18 15 11 H 0.05 3.09 7.75 -2.91 -0.02 3.07 15 12 C 0.01 0.44 5.31 84.65 0.45 0.89 15 13 N -0.92 -54.99 11.36 21.45 0.24 -54.75 15 14 Si 0.96 44.80 29.54 68.60 2.03 46.82 15 15 H -0.27 -11.88 7.11 99.48 0.71 -11.18 15 16 H -0.28 -12.81 7.11 99.48 0.71 -12.11 15 17 H -0.27 -12.41 7.11 99.48 0.71 -11.71 15 18 C 0.08 4.20 5.87 72.01 0.42 4.62 15 19 O -0.41 -18.67 10.41 -148.98 -1.55 -20.22 15 20 H 0.06 1.60 8.14 -2.38 -0.02 1.58 15 21 H 0.10 1.82 8.14 -2.39 -0.02 1.80 15 22 H 0.05 1.48 8.14 -2.39 -0.02 1.46 15 23 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.10 2.57 8.14 -2.39 -0.02 2.55 15 25 H 0.38 10.68 9.09 -74.06 -0.67 10.01 15 26 H 0.26 14.88 8.31 -92.70 -0.77 14.11 15 27 H 0.09 5.38 6.15 -2.39 -0.01 5.36 15 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 15 Total: -1.00 -67.91 232.53 1.34 -66.58 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.47 Total: 11.86 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 2.09 Total: -24.47 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.24 Total: -54.75 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -3.49 Total: -46.05 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -67.91 1.34 -66.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692534.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.158 kcal (2) G-P(sol) polarization free energy of solvation -67.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds