Wall clock time and date at job start Mon Mar 30 2020 02:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47777 * 2 1 4 4 C 1.53090 * 109.48583 * 239.97856 * 2 1 3 5 5 C 1.53176 * 109.16211 * 182.40378 * 4 2 1 6 6 H 1.09001 * 109.54484 * 176.84481 * 5 4 2 7 7 O 1.42899 * 109.54228 * 297.10928 * 5 4 2 8 8 C 1.53175 * 109.03819 * 56.97810 * 5 4 2 9 9 H 1.08999 * 109.57562 * 62.95751 * 8 5 4 10 10 C 1.50699 * 109.52476 * 183.11636 * 8 5 4 11 11 H 1.08007 * 119.99958 * 5.03549 * 10 8 5 12 12 C 1.37878 * 120.00404 * 185.02895 * 10 8 5 13 13 N 1.31516 * 119.99475 * 5.43154 * 12 10 8 14 14 Si 1.86794 * 120.00356 * 185.15058 * 12 10 8 15 15 H 1.48496 * 109.47274 * 85.00144 * 14 12 10 16 16 H 1.48504 * 109.47280 * 205.00319 * 14 12 10 17 17 H 1.48501 * 109.47240 * 325.00077 * 14 12 10 18 18 C 1.53094 * 109.16332 * 303.01790 * 8 5 4 19 19 O 1.42899 * 109.48098 * 120.02729 * 2 1 3 20 20 H 1.09005 * 109.46387 * 299.97567 * 1 2 3 21 21 H 1.09002 * 109.47197 * 59.97227 * 1 2 3 22 22 H 1.08996 * 109.46983 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.52295 * 302.30335 * 4 2 1 24 24 H 1.08995 * 109.52494 * 62.43121 * 4 2 1 25 25 H 0.96703 * 114.00301 * 299.55684 * 7 5 4 26 26 H 0.97006 * 119.99962 * 179.72324 * 13 12 10 27 27 H 1.08997 * 109.48135 * 177.58930 * 18 8 5 28 28 H 1.09000 * 109.48570 * 297.62082 * 18 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7221 -1.2496 5 6 3.5713 -0.7705 -1.2121 6 1 3.9395 -1.3322 -2.0706 7 8 4.0927 0.5595 -1.2496 8 6 4.0178 -1.4597 0.0809 9 1 3.6626 -2.4902 0.0870 10 6 5.5224 -1.4452 0.1656 11 1 6.1003 -0.9201 -0.5806 12 6 6.1613 -2.1023 1.1957 13 7 5.4663 -2.8298 2.0428 14 14 8.0147 -1.9655 1.3837 15 1 8.3452 -0.7381 2.1514 16 1 8.5280 -3.1558 2.1082 17 1 8.6445 -1.8938 0.0407 18 6 3.4308 -0.7091 1.2791 19 8 2.0066 -0.6741 1.1664 20 1 -0.3632 0.5135 0.8903 21 1 -0.3634 0.5143 -0.8897 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6447 -1.7373 -1.2710 24 1 1.7140 -0.1848 -2.1399 25 1 3.8485 1.0555 -2.0430 26 1 5.9163 -3.2953 2.7651 27 1 3.7101 -1.2201 2.2005 28 1 3.8193 0.3092 1.2960 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259692537.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:04 Heat of formation + Delta-G solvation = -111.907077 kcal Electronic energy + Delta-G solvation = -12125.718401 eV Core-core repulsion = 9948.190735 eV Total energy + Delta-G solvation = -2177.527667 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.79432 -35.48518 -33.36288 -31.80351 -30.39363 -27.21483 -24.42344 -22.92373 -21.15151 -19.11009 -16.48739 -16.19540 -15.28099 -14.86347 -14.34418 -13.87964 -13.64591 -12.74187 -12.29327 -12.05601 -11.83858 -11.58782 -11.10778 -10.91858 -10.81820 -10.46502 -10.25091 -10.02549 -9.47344 -9.00841 -8.97778 -8.43290 -8.12030 -6.01484 -4.02822 3.33911 3.39670 3.43135 4.44768 4.74730 5.12102 5.30966 5.42148 5.51578 5.70907 5.83709 6.04285 6.10545 6.20590 6.34624 6.46983 6.54876 6.72152 6.90689 7.15939 7.58982 7.72335 7.96475 8.17173 8.43861 8.60821 9.01088 9.60054 11.07914 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064165 B = 0.012876 C = 0.011535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.267017 B = 2174.125839 C = 2426.890468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.093 3.907 3 H 0.051 0.949 4 C -0.181 4.181 5 C 0.107 3.893 6 H 0.043 0.957 7 O -0.550 6.550 8 C 0.026 3.974 9 H 0.050 0.950 10 C -0.503 4.503 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.073 3.927 19 O -0.398 6.398 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.352 0.648 26 H 0.262 0.738 27 H 0.105 0.895 28 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 4.508 -5.169 9.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.034 3.966 3 H 0.069 0.931 4 C -0.219 4.219 5 C 0.049 3.951 6 H 0.061 0.939 7 O -0.353 6.353 8 C 0.008 3.992 9 H 0.067 0.933 10 C -0.541 4.541 11 H 0.080 0.920 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.003 4.003 19 O -0.318 6.318 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.195 0.805 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.999 4.108 -4.280 8.437 hybrid contribution 0.964 0.253 -0.630 1.179 sum -5.035 4.361 -4.910 8.275 Atomic orbital electron populations 1.21773 0.94723 1.02210 1.01310 1.21754 0.93344 0.95227 0.86245 0.93074 1.22959 0.99052 1.01727 0.98161 1.22106 0.89264 0.83044 1.00717 0.93894 1.86736 1.77054 1.26742 1.44745 1.19319 0.96552 0.94902 0.88442 0.93253 1.21012 0.90501 1.31971 1.10627 0.92024 1.25035 0.98411 0.94820 0.96103 1.69933 1.35637 1.30909 1.16828 0.86557 0.85507 0.77442 0.78183 1.20572 1.21349 1.20005 1.22887 0.76187 0.98951 1.02235 1.87824 1.24782 1.77640 1.41586 0.92420 0.92138 0.92273 0.90965 0.92505 0.80499 0.92836 0.87699 0.94818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.57 37.16 0.36 -1.76 15 2 C 0.09 1.74 3.12 -26.68 -0.08 1.65 15 3 H 0.05 0.97 7.82 -51.93 -0.41 0.56 15 4 C -0.18 -3.24 5.12 -26.59 -0.14 -3.38 15 5 C 0.11 2.29 3.24 -26.55 -0.09 2.20 15 6 H 0.04 0.89 8.14 -51.93 -0.42 0.47 15 7 O -0.55 -11.29 11.68 -35.23 -0.41 -11.70 15 8 C 0.03 0.69 2.01 -91.63 -0.18 0.50 15 9 H 0.05 1.39 8.12 -51.93 -0.42 0.97 15 10 C -0.50 -14.22 8.16 -34.44 -0.28 -14.50 15 11 H 0.06 1.76 7.55 -52.48 -0.40 1.36 15 12 C 0.06 1.62 5.28 -17.82 -0.09 1.53 15 13 N -0.89 -26.10 11.98 55.43 0.66 -25.44 15 14 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 15 15 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 18 C 0.07 1.87 5.78 37.21 0.22 2.08 15 19 O -0.40 -9.24 10.41 -35.23 -0.37 -9.61 15 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.35 5.22 9.09 45.56 0.41 5.64 15 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 27 H 0.11 2.93 6.79 -51.93 -0.35 2.58 15 28 H 0.03 0.87 7.82 -51.93 -0.41 0.47 15 LS Contribution 231.55 15.07 3.49 3.49 Total: -1.00 -30.64 231.55 -5.18 -35.82 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.24 Total: 2.35 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -0.29 Total: -11.67 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.66 Total: -25.44 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.78 Total: -21.31 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.64 -5.18 -35.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692537.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.085 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds