Wall clock time and date at job start Mon Mar 30 2020 02:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47777 * 2 1 4 4 C 1.53090 * 109.48583 * 239.97856 * 2 1 3 5 5 C 1.53176 * 109.16211 * 182.40378 * 4 2 1 6 6 H 1.09001 * 109.54484 * 176.84481 * 5 4 2 7 7 O 1.42899 * 109.54228 * 297.10928 * 5 4 2 8 8 C 1.53175 * 109.03819 * 56.97810 * 5 4 2 9 9 H 1.08999 * 109.57562 * 62.95751 * 8 5 4 10 10 C 1.50699 * 109.52476 * 183.11636 * 8 5 4 11 11 H 1.08007 * 119.99958 * 5.03549 * 10 8 5 12 12 C 1.37878 * 120.00404 * 185.02895 * 10 8 5 13 13 N 1.31516 * 119.99475 * 5.43154 * 12 10 8 14 14 Si 1.86794 * 120.00356 * 185.15058 * 12 10 8 15 15 H 1.48496 * 109.47274 * 85.00144 * 14 12 10 16 16 H 1.48504 * 109.47280 * 205.00319 * 14 12 10 17 17 H 1.48501 * 109.47240 * 325.00077 * 14 12 10 18 18 C 1.53094 * 109.16332 * 303.01790 * 8 5 4 19 19 O 1.42899 * 109.48098 * 120.02729 * 2 1 3 20 20 H 1.09005 * 109.46387 * 299.97567 * 1 2 3 21 21 H 1.09002 * 109.47197 * 59.97227 * 1 2 3 22 22 H 1.08996 * 109.46983 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.52295 * 302.30335 * 4 2 1 24 24 H 1.08995 * 109.52494 * 62.43121 * 4 2 1 25 25 H 0.96703 * 114.00301 * 299.55684 * 7 5 4 26 26 H 0.97006 * 119.99962 * 179.72324 * 13 12 10 27 27 H 1.08997 * 109.48135 * 177.58930 * 18 8 5 28 28 H 1.09000 * 109.48570 * 297.62082 * 18 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7221 -1.2496 5 6 3.5713 -0.7705 -1.2121 6 1 3.9395 -1.3322 -2.0706 7 8 4.0927 0.5595 -1.2496 8 6 4.0178 -1.4597 0.0809 9 1 3.6626 -2.4902 0.0870 10 6 5.5224 -1.4452 0.1656 11 1 6.1003 -0.9201 -0.5806 12 6 6.1613 -2.1023 1.1957 13 7 5.4663 -2.8298 2.0428 14 14 8.0147 -1.9655 1.3837 15 1 8.3452 -0.7381 2.1514 16 1 8.5280 -3.1558 2.1082 17 1 8.6445 -1.8938 0.0407 18 6 3.4308 -0.7091 1.2791 19 8 2.0066 -0.6741 1.1664 20 1 -0.3632 0.5135 0.8903 21 1 -0.3634 0.5143 -0.8897 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6447 -1.7373 -1.2710 24 1 1.7140 -0.1848 -2.1399 25 1 3.8485 1.0555 -2.0430 26 1 5.9163 -3.2953 2.7651 27 1 3.7101 -1.2201 2.2005 28 1 3.8193 0.3092 1.2960 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259692537.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:04 Heat of formation + Delta-G solvation = -135.033948 kcal Electronic energy + Delta-G solvation = -12126.721258 eV Core-core repulsion = 9948.190735 eV Total energy + Delta-G solvation = -2178.530523 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.50391 -37.15684 -35.38407 -33.36858 -32.29907 -28.81700 -26.47683 -24.67071 -22.75414 -20.87807 -18.55960 -17.81540 -17.00663 -16.84273 -16.07566 -15.50530 -15.39141 -14.48551 -13.95387 -13.85713 -13.35131 -13.08524 -12.83651 -12.67570 -12.54667 -12.22561 -12.03754 -11.87307 -11.27533 -10.95813 -10.74350 -10.53590 -9.94162 -8.16822 -6.26041 1.40133 1.41945 1.51634 2.41466 3.04106 3.20969 3.63955 3.95184 4.09801 4.20531 4.44005 4.59528 4.64090 4.72735 4.89249 4.91239 4.98830 5.10234 5.28885 5.36873 5.49759 5.72546 5.81356 6.16667 6.62822 6.84358 7.14403 7.41563 8.92040 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064165 B = 0.012876 C = 0.011535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.267017 B = 2174.125839 C = 2426.890468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 H 0.052 0.948 4 C -0.171 4.171 5 C 0.111 3.889 6 H 0.046 0.954 7 O -0.568 6.568 8 C 0.019 3.981 9 H 0.015 0.985 10 C -0.522 4.522 11 H 0.055 0.945 12 C 0.008 3.992 13 N -0.923 5.923 14 Si 0.960 3.040 15 H -0.276 1.276 16 H -0.281 1.281 17 H -0.267 1.267 18 C 0.091 3.909 19 O -0.415 6.415 20 H 0.060 0.940 21 H 0.097 0.903 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.103 0.897 25 H 0.379 0.621 26 H 0.263 0.737 27 H 0.071 0.929 28 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.627 5.500 -6.487 10.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.021 3.979 3 H 0.070 0.930 4 C -0.209 4.209 5 C 0.053 3.947 6 H 0.064 0.936 7 O -0.374 6.374 8 C 0.001 3.999 9 H 0.033 0.967 10 C -0.560 4.560 11 H 0.073 0.927 12 C -0.190 4.190 13 N -0.563 5.563 14 Si 0.785 3.215 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.192 1.192 18 C 0.015 3.985 19 O -0.335 6.335 20 H 0.079 0.921 21 H 0.116 0.884 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.121 0.879 25 H 0.227 0.773 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.483 5.116 -5.627 9.994 hybrid contribution 1.056 -0.014 -0.255 1.087 sum -5.427 5.102 -5.882 9.491 Atomic orbital electron populations 1.21772 0.91298 1.02823 1.03340 1.22189 0.95965 0.94800 0.84913 0.93009 1.22878 0.96114 1.02245 0.99634 1.21838 0.91681 0.83278 0.97948 0.93602 1.86652 1.77523 1.26384 1.46871 1.19232 0.95517 0.93806 0.91371 0.96659 1.21296 0.91990 1.31995 1.10687 0.92667 1.25847 1.03040 0.94412 0.95743 1.70060 1.37431 1.31516 1.17262 0.85542 0.79999 0.77569 0.78389 1.20123 1.20692 1.19203 1.22399 0.77855 0.97538 1.00722 1.87786 1.22932 1.78514 1.44316 0.92105 0.88446 0.92368 0.91259 0.87894 0.77325 0.92756 0.91109 0.95871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.57 71.98 0.69 -2.87 15 2 C 0.08 2.79 3.12 30.63 0.10 2.88 15 3 H 0.05 1.84 7.82 -2.39 -0.02 1.82 15 4 C -0.17 -5.65 5.12 30.68 0.16 -5.50 15 5 C 0.11 4.61 3.24 30.71 0.10 4.71 15 6 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 7 O -0.57 -22.26 11.68 -148.98 -1.74 -24.00 15 8 C 0.02 1.03 2.01 -11.45 -0.02 1.00 15 9 H 0.02 0.90 8.12 -2.39 -0.02 0.88 15 10 C -0.52 -29.95 8.16 25.60 0.21 -29.74 15 11 H 0.06 3.16 7.55 -2.91 -0.02 3.14 15 12 C 0.01 0.46 5.28 84.65 0.45 0.90 15 13 N -0.92 -55.28 11.98 21.45 0.26 -55.03 15 14 Si 0.96 44.96 29.54 68.60 2.03 46.99 15 15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 15 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 18 C 0.09 4.79 5.78 72.01 0.42 5.21 15 19 O -0.42 -19.31 10.41 -148.98 -1.55 -20.86 15 20 H 0.06 1.56 8.14 -2.38 -0.02 1.54 15 21 H 0.10 1.87 8.14 -2.39 -0.02 1.85 15 22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 15 23 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 24 H 0.10 2.49 8.14 -2.39 -0.02 2.47 15 25 H 0.38 10.05 9.09 -74.06 -0.67 9.38 15 26 H 0.26 14.93 8.31 -92.70 -0.77 14.16 15 27 H 0.07 4.14 6.79 -2.39 -0.02 4.13 15 28 H 0.02 1.23 7.82 -2.39 -0.02 1.21 15 Total: -1.00 -67.02 231.55 1.55 -65.47 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.47 Total: 10.82 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 2.09 Total: -23.40 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.26 Total: -55.03 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -3.29 Total: -44.85 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -67.02 1.55 -65.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692537.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.566 kcal (2) G-P(sol) polarization free energy of solvation -67.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds