Wall clock time and date at job start Mon Mar 30 2020 02:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.48030 * 2 1 4 4 C 1.53094 * 109.47724 * 239.98031 * 2 1 3 5 5 C 1.53183 * 109.15859 * 182.39643 * 4 2 1 6 6 H 1.08998 * 109.61846 * 297.06774 * 5 4 2 7 7 O 1.42902 * 109.54222 * 176.84738 * 5 4 2 8 8 C 1.53176 * 109.03838 * 56.98139 * 5 4 2 9 9 H 1.09000 * 109.57395 * 183.08221 * 8 5 4 10 10 C 1.50699 * 109.52481 * 62.92305 * 8 5 4 11 11 H 1.08008 * 119.99704 * 0.31727 * 10 8 5 12 12 C 1.37872 * 120.00183 * 180.31284 * 10 8 5 13 13 N 1.31517 * 120.00228 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99915 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47028 * 90.00615 * 14 12 10 16 16 H 1.48498 * 109.47456 * 210.00118 * 14 12 10 17 17 H 1.48502 * 109.47622 * 330.00400 * 14 12 10 18 18 C 1.53093 * 109.16348 * 303.01796 * 8 5 4 19 19 O 1.42902 * 109.49144 * 120.02030 * 2 1 3 20 20 H 1.09005 * 109.47122 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47069 * 300.01963 * 1 2 3 22 22 H 1.08993 * 109.47406 * 60.02274 * 1 2 3 23 23 H 1.08997 * 109.52488 * 62.49730 * 4 2 1 24 24 H 1.08998 * 109.57480 * 302.33117 * 4 2 1 25 25 H 0.96698 * 113.99849 * 60.44063 * 7 5 4 26 26 H 0.96992 * 119.99879 * 180.02562 * 13 12 10 27 27 H 1.09002 * 109.48198 * 177.59219 * 18 8 5 28 28 H 1.08999 * 109.48029 * 297.61833 * 18 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5711 -0.7704 -1.2124 6 1 3.9701 0.2435 -1.2418 7 8 4.0537 -1.5068 -2.3381 8 6 4.0179 -1.4597 0.0805 9 1 5.1061 -1.4501 0.1421 10 6 3.5255 -2.8839 0.0881 11 1 2.9556 -3.2627 -0.7476 12 6 3.8026 -3.7034 1.1616 13 7 4.4963 -3.2421 2.1793 14 14 3.1917 -5.4687 1.1713 15 1 4.2144 -6.3498 0.5526 16 1 2.9478 -5.9005 2.5710 17 1 1.9271 -5.5592 0.3979 18 6 3.4310 -0.7091 1.2788 19 8 2.0068 -0.6740 1.1664 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5141 0.8898 22 1 -0.3634 0.5134 -0.8901 23 1 1.7147 -0.1841 -2.1399 24 1 1.6444 -1.7373 -1.2722 25 1 3.8071 -1.1261 -3.1921 26 1 4.6915 -3.8188 2.9344 27 1 3.7105 -1.2201 2.2002 28 1 3.8195 0.3092 1.2956 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259692540.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:05 Heat of formation + Delta-G solvation = -106.323948 kcal Electronic energy + Delta-G solvation = -12258.649193 eV Core-core repulsion = 10081.363629 eV Total energy + Delta-G solvation = -2177.285564 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.70187 -35.67154 -33.19782 -31.70363 -30.36318 -26.83442 -24.70122 -22.82746 -21.11089 -19.13039 -16.59844 -15.83420 -15.26516 -14.99086 -14.30095 -14.06543 -13.33178 -12.58729 -12.20453 -12.00459 -11.91766 -11.59008 -11.04870 -10.85172 -10.65089 -10.42402 -10.15429 -9.65057 -9.60761 -9.10893 -8.73352 -8.46884 -8.12139 -5.91290 -3.90496 3.39850 3.45043 3.49668 4.54602 4.79534 5.12363 5.42512 5.49765 5.60681 5.79323 5.88022 6.06304 6.11488 6.27617 6.31040 6.44603 6.62249 6.79022 6.99076 7.05609 7.56064 7.64573 8.08161 8.30494 8.50079 8.60667 9.07231 9.70964 11.17598 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.016620 C = 0.015023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.462669 B = 1684.308602 C = 1863.309488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.090 3.910 3 H 0.038 0.962 4 C -0.170 4.170 5 C 0.110 3.890 6 H 0.026 0.974 7 O -0.550 6.550 8 C 0.018 3.982 9 H 0.039 0.961 10 C -0.473 4.473 11 H 0.059 0.941 12 C 0.056 3.944 13 N -0.903 5.903 14 Si 0.896 3.104 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.070 3.930 19 O -0.369 6.369 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.352 0.648 26 H 0.260 0.740 27 H 0.127 0.873 28 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 6.146 -4.698 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.031 3.969 3 H 0.056 0.944 4 C -0.208 4.208 5 C 0.051 3.949 6 H 0.044 0.956 7 O -0.353 6.353 8 C 0.000 4.000 9 H 0.057 0.943 10 C -0.511 4.511 11 H 0.077 0.923 12 C -0.144 4.144 13 N -0.544 5.544 14 Si 0.725 3.275 15 H -0.210 1.210 16 H -0.214 1.214 17 H -0.201 1.201 18 C -0.006 4.006 19 O -0.288 6.288 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.196 0.804 26 H 0.069 0.931 27 H 0.145 0.855 28 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -4.524 5.609 -3.899 8.193 hybrid contribution -0.304 -0.433 -0.627 0.820 sum -4.827 5.177 -4.526 8.402 Atomic orbital electron populations 1.21718 0.94433 1.02571 1.01042 1.21787 0.94115 0.93975 0.86979 0.94381 1.22846 0.98076 1.02711 0.97154 1.22023 0.91486 0.92618 0.88763 0.95624 1.86759 1.78486 1.54957 1.15065 1.19382 0.97286 0.95801 0.87571 0.94282 1.20879 1.32747 0.94467 1.03030 0.92307 1.24914 0.95317 0.98511 0.95612 1.69764 1.40564 1.35990 1.08104 0.86522 0.79044 0.85034 0.76920 1.20977 1.21404 1.20080 1.22850 0.78674 0.95325 1.03766 1.87923 1.23113 1.77338 1.40420 0.91871 0.92518 0.92272 0.93432 0.89579 0.80446 0.93051 0.85512 0.97830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.57 37.16 0.36 -1.86 15 2 C 0.09 1.73 3.26 -26.68 -0.09 1.64 15 3 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 4 C -0.17 -3.30 4.78 -26.59 -0.13 -3.43 15 5 C 0.11 2.37 3.21 -26.55 -0.09 2.28 15 6 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 7 O -0.55 -11.66 12.77 -35.23 -0.45 -12.11 15 8 C 0.02 0.47 2.38 -91.63 -0.22 0.25 15 9 H 0.04 1.10 8.14 -51.93 -0.42 0.68 15 10 C -0.47 -13.48 7.20 -34.44 -0.25 -13.73 15 11 H 0.06 1.71 6.79 -52.48 -0.36 1.35 15 12 C 0.06 1.60 5.30 -17.82 -0.09 1.50 15 13 N -0.90 -26.42 11.31 55.43 0.63 -25.79 15 14 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 15 15 H -0.28 -7.04 7.11 56.52 0.40 -6.64 15 16 H -0.29 -7.14 7.11 56.52 0.40 -6.73 15 17 H -0.28 -6.86 7.11 56.52 0.40 -6.45 15 18 C 0.07 1.73 6.07 37.21 0.23 1.96 15 19 O -0.37 -8.78 10.09 -35.23 -0.36 -9.14 15 20 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.09 1.88 6.89 -51.93 -0.36 1.53 15 25 H 0.35 5.36 9.09 45.56 0.41 5.78 15 26 H 0.26 7.26 8.31 -40.82 -0.34 6.93 15 27 H 0.13 3.47 6.02 -51.93 -0.31 3.15 15 28 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 15 LS Contribution 229.03 15.07 3.45 3.45 Total: -1.00 -31.07 229.03 -5.16 -36.23 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.13 Total: 1.30 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -0.28 Total: -11.38 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.63 Total: -25.79 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.81 Total: -21.24 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -31.07 -5.16 -36.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692540.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.096 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds