Wall clock time and date at job start Mon Mar 30 2020 02:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.48030 * 2 1 4 4 C 1.53094 * 109.47724 * 239.98031 * 2 1 3 5 5 C 1.53183 * 109.15859 * 182.39643 * 4 2 1 6 6 H 1.08998 * 109.61846 * 297.06774 * 5 4 2 7 7 O 1.42902 * 109.54222 * 176.84738 * 5 4 2 8 8 C 1.53176 * 109.03838 * 56.98139 * 5 4 2 9 9 H 1.09000 * 109.57395 * 183.08221 * 8 5 4 10 10 C 1.50699 * 109.52481 * 62.92305 * 8 5 4 11 11 H 1.08008 * 119.99704 * 0.31727 * 10 8 5 12 12 C 1.37872 * 120.00183 * 180.31284 * 10 8 5 13 13 N 1.31517 * 120.00228 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99915 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47028 * 90.00615 * 14 12 10 16 16 H 1.48498 * 109.47456 * 210.00118 * 14 12 10 17 17 H 1.48502 * 109.47622 * 330.00400 * 14 12 10 18 18 C 1.53093 * 109.16348 * 303.01796 * 8 5 4 19 19 O 1.42902 * 109.49144 * 120.02030 * 2 1 3 20 20 H 1.09005 * 109.47122 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47069 * 300.01963 * 1 2 3 22 22 H 1.08993 * 109.47406 * 60.02274 * 1 2 3 23 23 H 1.08997 * 109.52488 * 62.49730 * 4 2 1 24 24 H 1.08998 * 109.57480 * 302.33117 * 4 2 1 25 25 H 0.96698 * 113.99849 * 60.44063 * 7 5 4 26 26 H 0.96992 * 119.99879 * 180.02562 * 13 12 10 27 27 H 1.09002 * 109.48198 * 177.59219 * 18 8 5 28 28 H 1.08999 * 109.48029 * 297.61833 * 18 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5711 -0.7704 -1.2124 6 1 3.9701 0.2435 -1.2418 7 8 4.0537 -1.5068 -2.3381 8 6 4.0179 -1.4597 0.0805 9 1 5.1061 -1.4501 0.1421 10 6 3.5255 -2.8839 0.0881 11 1 2.9556 -3.2627 -0.7476 12 6 3.8026 -3.7034 1.1616 13 7 4.4963 -3.2421 2.1793 14 14 3.1917 -5.4687 1.1713 15 1 4.2144 -6.3498 0.5526 16 1 2.9478 -5.9005 2.5710 17 1 1.9271 -5.5592 0.3979 18 6 3.4310 -0.7091 1.2788 19 8 2.0068 -0.6740 1.1664 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5141 0.8898 22 1 -0.3634 0.5134 -0.8901 23 1 1.7147 -0.1841 -2.1399 24 1 1.6444 -1.7373 -1.2722 25 1 3.8071 -1.1261 -3.1921 26 1 4.6915 -3.8188 2.9344 27 1 3.7105 -1.2201 2.2002 28 1 3.8195 0.3092 1.2956 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259692540.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:05 Heat of formation + Delta-G solvation = -129.990935 kcal Electronic energy + Delta-G solvation = -12259.675471 eV Core-core repulsion = 10081.363629 eV Total energy + Delta-G solvation = -2178.311842 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.04 seconds Orbital eigenvalues (eV) -40.41752 -37.34032 -35.20938 -33.30170 -32.27777 -28.43323 -26.77692 -24.58965 -22.67009 -20.96542 -18.43121 -17.67722 -17.05456 -16.77585 -16.24665 -15.69447 -15.16574 -14.30264 -13.94094 -13.76296 -13.33836 -13.06233 -12.85761 -12.66767 -12.57080 -12.13181 -12.08336 -11.51812 -11.36956 -10.94009 -10.56063 -10.42997 -10.04246 -8.07958 -6.13819 1.39576 1.40377 1.50424 2.45599 3.14019 3.27115 3.65133 3.96679 4.14267 4.24736 4.43215 4.47003 4.62682 4.70915 4.92332 4.95050 5.01190 5.22299 5.33657 5.40463 5.59141 5.59655 5.93739 6.30635 6.74635 6.87481 7.15193 7.50561 8.99286 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.016620 C = 0.015023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.462669 B = 1684.308602 C = 1863.309488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.077 3.923 3 H 0.061 0.939 4 C -0.161 4.161 5 C 0.111 3.889 6 H 0.050 0.950 7 O -0.574 6.574 8 C 0.008 3.992 9 H 0.002 0.998 10 C -0.485 4.485 11 H 0.047 0.953 12 C 0.005 3.995 13 N -0.926 5.926 14 Si 0.953 3.047 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.080 3.920 19 O -0.394 6.394 20 H 0.047 0.953 21 H 0.064 0.936 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.055 0.945 25 H 0.380 0.620 26 H 0.260 0.740 27 H 0.093 0.907 28 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 6.998 -5.884 10.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.019 3.981 3 H 0.079 0.921 4 C -0.199 4.199 5 C 0.053 3.947 6 H 0.068 0.932 7 O -0.380 6.380 8 C -0.010 4.010 9 H 0.021 0.979 10 C -0.523 4.523 11 H 0.065 0.935 12 C -0.192 4.192 13 N -0.568 5.568 14 Si 0.779 3.221 15 H -0.204 1.204 16 H -0.208 1.208 17 H -0.197 1.197 18 C 0.003 3.997 19 O -0.314 6.314 20 H 0.066 0.934 21 H 0.083 0.917 22 H 0.114 0.886 23 H 0.111 0.889 24 H 0.074 0.926 25 H 0.227 0.773 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.792 6.474 -5.113 10.080 hybrid contribution 0.095 -0.649 -0.317 0.729 sum -5.696 5.825 -5.430 9.791 Atomic orbital electron populations 1.21729 0.91776 1.02332 1.03324 1.22215 0.96238 0.94488 0.85159 0.92114 1.22756 0.96092 1.01720 0.99296 1.21881 0.93094 0.92827 0.86943 0.93235 1.86678 1.78931 1.55862 1.16562 1.19373 0.95061 0.95585 0.91001 0.97948 1.21085 1.32521 0.96111 1.02558 0.93469 1.25670 0.95744 1.02246 0.95513 1.69900 1.41351 1.37067 1.08455 0.85632 0.78615 0.80749 0.77088 1.20449 1.20823 1.19727 1.22483 0.79682 0.95871 1.01666 1.87873 1.22098 1.78426 1.42955 0.93366 0.91701 0.88561 0.88861 0.92602 0.77279 0.93098 0.88953 0.95535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 9.57 71.98 0.69 -3.12 15 2 C 0.08 2.74 3.26 30.63 0.10 2.84 15 3 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 4 C -0.16 -5.80 4.78 30.69 0.15 -5.65 15 5 C 0.11 4.60 3.21 30.71 0.10 4.70 15 6 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 7 O -0.57 -23.40 12.77 -148.98 -1.90 -25.30 15 8 C 0.01 0.45 2.38 -11.45 -0.03 0.42 15 9 H 0.00 0.14 8.14 -2.39 -0.02 0.12 15 10 C -0.48 -28.03 7.20 25.60 0.18 -27.85 15 11 H 0.05 2.77 6.79 -2.91 -0.02 2.75 15 12 C 0.00 0.29 5.30 84.65 0.45 0.74 15 13 N -0.93 -55.48 11.31 21.45 0.24 -55.24 15 14 Si 0.95 46.51 29.54 68.60 2.03 48.54 15 15 H -0.28 -13.28 7.11 99.48 0.71 -12.58 15 16 H -0.28 -13.44 7.11 99.48 0.71 -12.73 15 17 H -0.27 -13.03 7.11 99.48 0.71 -12.32 15 18 C 0.08 3.96 6.07 72.01 0.44 4.40 15 19 O -0.39 -18.47 10.09 -148.98 -1.50 -19.97 15 20 H 0.05 1.50 8.14 -2.38 -0.02 1.48 15 21 H 0.06 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 23 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.06 2.36 6.89 -2.39 -0.02 2.34 15 25 H 0.38 10.48 9.09 -74.06 -0.67 9.81 15 26 H 0.26 14.84 8.31 -92.71 -0.77 14.07 15 27 H 0.09 5.21 6.02 -2.39 -0.01 5.19 15 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 Total: -1.00 -67.74 229.03 1.41 -66.33 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.47 Total: 9.17 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 2.08 Total: -23.53 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.24 Total: -55.24 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -3.41 Total: -45.28 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -67.74 1.41 -66.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692540.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.659 kcal (2) G-P(sol) polarization free energy of solvation -67.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.04 seconds