Wall clock time and date at job start Mon Mar 30 2020 01:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.30505 * 2 1 4 4 C 1.53707 * 110.43178 * 237.76618 * 2 1 3 5 5 C 1.52941 * 112.49180 * 243.91261 * 4 2 1 6 6 H 1.08994 * 109.45633 * 89.74167 * 5 4 2 7 7 C 1.52998 * 109.60073 * 209.96916 * 5 4 2 8 8 C 1.50702 * 109.47333 * 185.98942 * 7 5 4 9 9 H 1.08005 * 119.99430 * 359.97438 * 8 7 5 10 10 C 1.37877 * 120.00308 * 179.97438 * 8 7 5 11 11 N 1.31511 * 119.99725 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99729 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47255 * 60.00398 * 12 10 8 14 14 H 1.48507 * 109.47013 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47482 * 300.00042 * 12 10 8 16 16 C 1.55154 * 108.95986 * 329.89508 * 5 4 2 17 17 S 1.83397 * 110.33823 * 122.17134 * 2 1 3 18 18 H 1.08995 * 109.47190 * 300.70632 * 1 2 3 19 19 H 1.09009 * 109.46934 * 60.69947 * 1 2 3 20 20 H 1.08998 * 109.47354 * 180.70006 * 1 2 3 21 21 H 1.09006 * 108.88662 * 4.70758 * 4 2 1 22 22 H 1.08995 * 108.88931 * 123.11228 * 4 2 1 23 23 H 1.09008 * 109.47490 * 305.98871 * 7 5 4 24 24 H 1.08999 * 109.47809 * 65.98750 * 7 5 4 25 25 H 0.97009 * 119.99548 * 179.97438 * 11 10 8 26 26 H 1.09002 * 111.12934 * 283.53378 * 16 5 4 27 27 H 1.08994 * 111.16732 * 159.36806 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0666 -0.7683 -1.2184 5 6 2.8531 -2.0185 -0.8217 6 1 2.1741 -2.8685 -0.7546 7 6 3.9289 -2.3027 -1.8719 8 6 4.6039 -3.6130 -1.5577 9 1 4.2965 -4.1855 -0.6950 10 6 5.6137 -4.0809 -2.3716 11 7 5.9876 -3.3839 -3.4223 12 14 6.4508 -5.7047 -1.9816 13 1 5.4441 -6.7964 -1.9954 14 1 7.4941 -5.9812 -3.0016 15 1 7.0791 -5.6277 -0.6384 16 6 3.5225 -1.7767 0.5569 17 16 2.1674 -0.9156 1.4556 18 1 -0.3633 0.5247 0.8835 19 1 -0.3633 0.5030 -0.8963 20 1 -0.3634 -1.0276 0.0126 21 1 1.2265 -1.0644 -1.8467 22 1 2.7177 -0.1091 -1.7924 23 1 3.4682 -2.3587 -2.8582 24 1 4.6680 -1.5016 -1.8611 25 1 6.6984 -3.7129 -3.9946 26 1 4.3994 -1.1364 0.4611 27 1 3.7782 -2.7192 1.0410 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259695268.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:27 Heat of formation + Delta-G solvation = -30.343782 kcal Electronic energy + Delta-G solvation = -9582.323831 eV Core-core repulsion = 7851.085885 eV Total energy + Delta-G solvation = -1731.237946 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -36.68936 -33.26468 -31.64445 -27.36153 -26.17446 -23.67060 -21.32758 -19.13264 -16.52285 -15.91608 -14.83594 -14.45105 -14.06860 -13.46488 -12.64957 -12.33882 -12.14237 -12.09636 -11.23956 -11.18675 -10.87901 -10.83200 -10.52608 -10.37985 -10.04767 -9.56860 -9.11860 -9.05044 -8.40196 -7.30830 -6.05232 -4.08081 2.33518 2.85958 3.31024 3.35659 3.38124 4.41928 4.99006 5.10571 5.30890 5.38060 5.55148 5.63936 5.88620 5.90436 6.03061 6.11652 6.28018 6.33294 6.61888 6.80080 6.89230 7.56758 7.68089 7.92432 8.33987 8.97559 9.56591 11.05883 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.073493 B = 0.009792 C = 0.009070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.896686 B = 2858.872712 C = 3086.240861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.033 4.033 3 H 0.087 0.913 4 C -0.124 4.124 5 C -0.085 4.085 6 H 0.071 0.929 7 C 0.033 3.967 8 C -0.522 4.522 9 H 0.056 0.944 10 C 0.059 3.941 11 N -0.895 5.895 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.029 4.029 17 S -0.349 6.349 18 H 0.055 0.945 19 H 0.063 0.937 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.020 0.980 24 H 0.019 0.981 25 H 0.262 0.738 26 H 0.086 0.914 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 4.962 4.693 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 H 0.106 0.894 4 C -0.163 4.163 5 C -0.105 4.105 6 H 0.090 0.910 7 C -0.006 4.006 8 C -0.560 4.560 9 H 0.074 0.926 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.176 4.176 17 S -0.122 6.122 18 H 0.074 0.926 19 H 0.082 0.918 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.381 4.950 5.726 10.572 hybrid contribution 0.957 -0.849 -1.013 1.632 sum -6.424 4.101 4.712 8.960 Atomic orbital electron populations 1.21800 0.92872 1.02812 1.01530 1.23601 0.98419 1.00390 0.93729 0.89447 1.22235 1.00271 0.97479 0.96311 1.22111 0.97796 0.95936 0.94653 0.91033 1.19164 0.91895 0.96889 0.92605 1.21187 1.18273 1.05538 1.11012 0.92586 1.25006 0.96954 0.97293 0.95023 1.69949 1.29670 1.38431 1.15340 0.86664 0.79236 0.84107 0.78067 1.20207 1.21296 1.20184 1.24400 0.95686 1.01491 0.96066 1.87487 1.43175 1.59942 1.21640 0.92576 0.91840 0.91580 0.91063 0.91257 0.96146 0.96249 0.92879 0.89552 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.05 37.16 0.34 -1.32 15 2 C -0.03 -0.50 3.91 -26.36 -0.10 -0.60 15 3 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 4 C -0.12 -2.09 5.57 -26.39 -0.15 -2.24 15 5 C -0.08 -1.69 2.48 -89.51 -0.22 -1.92 15 6 H 0.07 1.48 8.14 -51.93 -0.42 1.05 15 7 C 0.03 0.81 4.24 -27.88 -0.12 0.69 15 8 C -0.52 -14.20 8.64 -34.44 -0.30 -14.50 15 9 H 0.06 1.48 7.46 -52.48 -0.39 1.09 15 10 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 11 N -0.89 -26.32 13.29 55.43 0.74 -25.58 15 12 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 15 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 16 C -0.03 -0.55 6.35 38.30 0.24 -0.31 15 17 S -0.35 -6.09 22.66 -107.50 -2.44 -8.53 15 18 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 19 H 0.06 0.68 8.14 -51.92 -0.42 0.26 15 20 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.07 1.11 7.63 -51.93 -0.40 0.72 15 22 H 0.07 1.18 7.80 -51.93 -0.41 0.77 15 23 H 0.02 0.53 8.14 -51.92 -0.42 0.11 15 24 H 0.02 0.50 8.10 -51.93 -0.42 0.08 15 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 26 H 0.09 1.67 8.07 -51.93 -0.42 1.25 15 27 H 0.10 1.98 7.91 -51.93 -0.41 1.57 15 LS Contribution 236.64 15.07 3.57 3.57 Total: -1.00 -28.49 236.64 -7.68 -36.16 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -4.11 Total: -3.27 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -0.41 Total: -18.63 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.74 Total: -25.58 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -6.09 SS G_CDS: -2.44 Total: -8.53 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.49 -7.68 -36.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695268.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.821 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds