Wall clock time and date at job start Mon Mar 30 2020 01:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.30505 * 2 1 4 4 C 1.53707 * 110.43178 * 237.76618 * 2 1 3 5 5 C 1.52941 * 112.49180 * 243.91261 * 4 2 1 6 6 H 1.08994 * 109.45633 * 89.74167 * 5 4 2 7 7 C 1.52998 * 109.60073 * 209.96916 * 5 4 2 8 8 C 1.50702 * 109.47333 * 185.98942 * 7 5 4 9 9 H 1.08005 * 119.99430 * 359.97438 * 8 7 5 10 10 C 1.37877 * 120.00308 * 179.97438 * 8 7 5 11 11 N 1.31511 * 119.99725 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99729 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47255 * 60.00398 * 12 10 8 14 14 H 1.48507 * 109.47013 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47482 * 300.00042 * 12 10 8 16 16 C 1.55154 * 108.95986 * 329.89508 * 5 4 2 17 17 S 1.83397 * 110.33823 * 122.17134 * 2 1 3 18 18 H 1.08995 * 109.47190 * 300.70632 * 1 2 3 19 19 H 1.09009 * 109.46934 * 60.69947 * 1 2 3 20 20 H 1.08998 * 109.47354 * 180.70006 * 1 2 3 21 21 H 1.09006 * 108.88662 * 4.70758 * 4 2 1 22 22 H 1.08995 * 108.88931 * 123.11228 * 4 2 1 23 23 H 1.09008 * 109.47490 * 305.98871 * 7 5 4 24 24 H 1.08999 * 109.47809 * 65.98750 * 7 5 4 25 25 H 0.97009 * 119.99548 * 179.97438 * 11 10 8 26 26 H 1.09002 * 111.12934 * 283.53378 * 16 5 4 27 27 H 1.08994 * 111.16732 * 159.36806 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0666 -0.7683 -1.2184 5 6 2.8531 -2.0185 -0.8217 6 1 2.1741 -2.8685 -0.7546 7 6 3.9289 -2.3027 -1.8719 8 6 4.6039 -3.6130 -1.5577 9 1 4.2965 -4.1855 -0.6950 10 6 5.6137 -4.0809 -2.3716 11 7 5.9876 -3.3839 -3.4223 12 14 6.4508 -5.7047 -1.9816 13 1 5.4441 -6.7964 -1.9954 14 1 7.4941 -5.9812 -3.0016 15 1 7.0791 -5.6277 -0.6384 16 6 3.5225 -1.7767 0.5569 17 16 2.1674 -0.9156 1.4556 18 1 -0.3633 0.5247 0.8835 19 1 -0.3633 0.5030 -0.8963 20 1 -0.3634 -1.0276 0.0126 21 1 1.2265 -1.0644 -1.8467 22 1 2.7177 -0.1091 -1.7924 23 1 3.4682 -2.3587 -2.8582 24 1 4.6680 -1.5016 -1.8611 25 1 6.6984 -3.7129 -3.9946 26 1 4.3994 -1.1364 0.4611 27 1 3.7782 -2.7192 1.0410 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259695268.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:27 Heat of formation + Delta-G solvation = -45.667105 kcal Electronic energy + Delta-G solvation = -9582.988300 eV Core-core repulsion = 7851.085885 eV Total energy + Delta-G solvation = -1731.902415 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.23613 -35.09288 -33.28074 -29.24146 -27.56315 -25.46599 -22.83215 -20.70220 -18.57431 -17.34407 -16.58004 -16.20731 -15.44274 -14.77216 -14.26460 -14.04491 -13.81828 -13.58074 -12.88667 -12.81928 -12.51776 -12.31660 -12.21604 -11.98699 -11.65897 -11.23174 -11.06343 -10.69683 -10.50778 -8.69985 -8.19646 -6.29564 0.97877 1.41103 1.42087 1.43833 1.50661 2.41232 3.14575 3.68482 3.86790 4.04358 4.10186 4.33250 4.49721 4.66160 4.81504 4.89027 4.95059 5.07159 5.13679 5.18942 5.30621 5.47664 5.67158 5.82108 6.23563 6.85333 7.39558 8.91767 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.073493 B = 0.009792 C = 0.009070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.896686 B = 2858.872712 C = 3086.240861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.025 4.025 3 H 0.102 0.898 4 C -0.121 4.121 5 C -0.078 4.078 6 H 0.065 0.935 7 C 0.040 3.960 8 C -0.537 4.537 9 H 0.060 0.940 10 C 0.004 3.996 11 N -0.932 5.932 12 Si 0.959 3.041 13 H -0.268 1.268 14 H -0.285 1.285 15 H -0.268 1.268 16 C -0.031 4.031 17 S -0.351 6.351 18 H 0.066 0.934 19 H 0.087 0.913 20 H 0.060 0.940 21 H 0.085 0.915 22 H 0.065 0.935 23 H -0.003 1.003 24 H -0.003 1.003 25 H 0.263 0.737 26 H 0.078 0.922 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 5.009 5.432 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.153 4.153 3 H 0.121 0.879 4 C -0.160 4.160 5 C -0.098 4.098 6 H 0.084 0.916 7 C 0.002 3.998 8 C -0.575 4.575 9 H 0.078 0.922 10 C -0.194 4.194 11 N -0.572 5.572 12 Si 0.783 3.217 13 H -0.193 1.193 14 H -0.210 1.210 15 H -0.193 1.193 16 C -0.179 4.179 17 S -0.124 6.124 18 H 0.085 0.915 19 H 0.106 0.894 20 H 0.079 0.921 21 H 0.104 0.896 22 H 0.084 0.916 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.325 5.000 6.479 11.674 hybrid contribution 1.214 -0.815 -1.252 1.925 sum -7.110 4.185 5.227 9.767 Atomic orbital electron populations 1.21802 0.90516 1.03043 1.03267 1.23739 1.00230 1.00248 0.91088 0.87930 1.22151 1.00340 0.96082 0.97380 1.21949 0.96565 0.97523 0.93762 0.91602 1.19005 0.92489 0.95364 0.92979 1.21605 1.18409 1.06458 1.10984 0.92167 1.25885 0.97768 1.00932 0.94857 1.70075 1.30404 1.40309 1.16450 0.85596 0.78214 0.79762 0.78081 1.19330 1.21025 1.19288 1.24213 0.96286 1.01464 0.95908 1.87491 1.42158 1.59987 1.22737 0.91488 0.89441 0.92104 0.89605 0.91638 0.98501 0.98505 0.92818 0.90315 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.05 71.98 0.65 -2.12 15 2 C -0.02 -0.68 3.91 30.83 0.12 -0.56 15 3 H 0.10 2.57 8.14 -2.39 -0.02 2.55 15 4 C -0.12 -3.89 5.57 30.81 0.17 -3.72 15 5 C -0.08 -3.09 2.48 -10.08 -0.03 -3.12 15 6 H 0.07 2.69 8.14 -2.39 -0.02 2.67 15 7 C 0.04 2.03 4.24 29.85 0.13 2.15 15 8 C -0.54 -29.49 8.64 25.60 0.22 -29.27 15 9 H 0.06 3.18 7.46 -2.91 -0.02 3.16 15 10 C 0.00 0.20 5.46 84.66 0.46 0.66 15 11 N -0.93 -55.67 13.29 21.45 0.28 -55.39 15 12 Si 0.96 43.66 29.54 68.60 2.03 45.69 15 13 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 15 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 16 C -0.03 -1.17 6.35 72.72 0.46 -0.71 15 17 S -0.35 -11.63 22.66 -56.49 -1.28 -12.91 15 18 H 0.07 1.33 8.14 -2.39 -0.02 1.31 15 19 H 0.09 1.52 8.14 -2.38 -0.02 1.51 15 20 H 0.06 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.09 2.51 7.63 -2.38 -0.02 2.49 15 22 H 0.06 2.16 7.80 -2.39 -0.02 2.14 15 23 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 15 24 H 0.00 -0.19 8.10 -2.39 -0.02 -0.20 15 25 H 0.26 14.86 8.31 -92.70 -0.77 14.09 15 26 H 0.08 3.07 8.07 -2.39 -0.02 3.05 15 27 H 0.09 3.69 7.91 -2.39 -0.02 3.67 15 Total: -1.00 -60.21 236.64 4.34 -55.87 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 1.12 Total: 3.42 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 2.19 Total: -36.69 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.28 Total: -55.39 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -11.63 SS G_CDS: -1.28 Total: -12.91 kcal Total: -60.21 4.34 -55.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695268.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.207 kcal (2) G-P(sol) polarization free energy of solvation -60.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds