Wall clock time and date at job start Mon Mar 30 2020 01:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.75460 * 2 1 4 4 C 1.55128 * 110.85670 * 123.49405 * 2 1 3 5 5 C 1.54042 * 106.80637 * 160.10559 * 4 2 1 6 6 H 1.09004 * 109.28033 * 72.87593 * 5 4 2 7 7 C 1.52999 * 109.63459 * 193.02097 * 5 4 2 8 8 C 1.50705 * 109.47388 * 186.17083 * 7 5 4 9 9 H 1.08002 * 119.99453 * 359.97438 * 8 7 5 10 10 C 1.37874 * 120.00080 * 180.02562 * 8 7 5 11 11 N 1.31519 * 119.99757 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00102 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47293 * 90.00269 * 12 10 8 14 14 H 1.48501 * 109.46931 * 210.00164 * 12 10 8 15 15 H 1.48498 * 109.47237 * 330.00237 * 12 10 8 16 16 C 1.54274 * 109.08860 * 313.05654 * 5 4 2 17 17 S 1.83091 * 104.64945 * 27.82314 * 16 5 4 18 18 H 1.09001 * 109.47002 * 179.29696 * 1 2 3 19 19 H 1.08993 * 109.46955 * 299.30133 * 1 2 3 20 20 H 1.09000 * 109.47050 * 59.29962 * 1 2 3 21 21 H 1.08999 * 109.97931 * 279.65717 * 4 2 1 22 22 H 1.09004 * 109.97728 * 40.93732 * 4 2 1 23 23 H 1.09000 * 109.47502 * 306.16874 * 7 5 4 24 24 H 1.09000 * 109.47261 * 66.17309 * 7 5 4 25 25 H 0.97000 * 120.00175 * 180.02562 * 11 10 8 26 26 H 1.08996 * 110.40029 * 269.02947 * 16 5 4 27 27 H 1.08997 * 110.49928 * 146.66529 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9163 1.0193 0.0000 4 6 2.0824 -0.8000 1.2089 5 6 3.5367 -1.1757 0.8674 6 1 4.1629 -0.2858 0.9316 7 6 4.0406 -2.2303 1.8547 8 6 5.5064 -2.4844 1.6137 9 1 6.0264 -1.9476 0.8339 10 6 6.1833 -3.4028 2.3878 11 7 7.4626 -3.6241 2.1778 12 14 5.2837 -4.3316 3.7359 13 1 4.7196 -5.5877 3.1800 14 1 6.2328 -4.6572 4.8307 15 1 4.1837 -3.4883 4.2688 16 6 3.5879 -1.7425 -0.5666 17 16 2.1833 -0.9461 -1.4297 18 1 -0.3633 -1.0276 -0.0126 19 1 -0.3633 0.5029 0.8961 20 1 -0.3633 0.5247 -0.8836 21 1 2.0544 -0.1836 2.1075 22 1 1.4918 -1.7039 1.3585 23 1 3.8969 -1.8719 2.8740 24 1 3.4833 -3.1563 1.7131 25 1 7.9388 -4.2705 2.7221 26 1 3.4606 -2.8249 -0.5520 27 1 4.5292 -1.4778 -1.0482 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259695270.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:28 Heat of formation + Delta-G solvation = -28.021818 kcal Electronic energy + Delta-G solvation = -9602.308057 eV Core-core repulsion = 7871.170799 eV Total energy + Delta-G solvation = -1731.137258 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -36.79032 -33.24532 -31.78533 -28.01625 -26.27196 -23.34493 -21.02714 -19.40049 -16.92651 -16.13261 -15.04164 -14.39194 -13.73237 -13.61728 -12.91080 -12.42831 -12.42662 -12.09173 -11.53621 -11.40821 -10.99295 -10.89469 -10.64603 -10.19429 -9.92816 -9.67641 -9.27775 -9.19300 -8.59322 -7.33260 -6.09487 -4.08436 2.23961 2.84928 3.26873 3.34832 3.37039 4.40121 4.86603 5.01934 5.23140 5.32517 5.45031 5.60676 5.69846 5.76041 5.92074 6.06607 6.14440 6.23333 6.50595 6.60314 6.65728 7.11829 7.27100 7.70818 8.46513 8.94503 9.52386 11.03696 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.066057 B = 0.010621 C = 0.009668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.774771 B = 2635.726653 C = 2895.505125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.038 4.038 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.081 4.081 6 H 0.074 0.926 7 C -0.003 4.003 8 C -0.522 4.522 9 H 0.073 0.927 10 C 0.068 3.932 11 N -0.901 5.901 12 Si 0.878 3.122 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.266 1.266 16 C -0.035 4.035 17 S -0.340 6.340 18 H 0.064 0.936 19 H 0.064 0.936 20 H 0.057 0.943 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.020 0.980 24 H 0.015 0.985 25 H 0.263 0.737 26 H 0.093 0.907 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.612 5.203 -1.681 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 H 0.109 0.891 4 C -0.162 4.162 5 C -0.101 4.101 6 H 0.092 0.908 7 C -0.041 4.041 8 C -0.560 4.560 9 H 0.091 0.909 10 C -0.133 4.133 11 N -0.540 5.540 12 Si 0.705 3.295 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.191 1.191 16 C -0.183 4.183 17 S -0.114 6.114 18 H 0.084 0.916 19 H 0.083 0.917 20 H 0.076 0.924 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.038 0.962 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.819 5.025 -2.777 13.139 hybrid contribution 0.191 -0.511 1.835 1.915 sum -11.628 4.513 -0.942 12.508 Atomic orbital electron populations 1.21680 0.92674 1.02818 1.01720 1.23913 0.98254 1.00472 0.94046 0.89067 1.22833 0.96964 0.99708 0.96708 1.21897 0.94158 1.00314 0.93750 0.90751 1.19627 0.97290 0.93184 0.94026 1.21112 0.92537 1.23402 1.18958 0.90857 1.25018 0.94703 0.96532 0.97086 1.69911 1.08539 1.35076 1.40448 0.86804 0.79910 0.80595 0.82157 1.20228 1.21340 1.19053 1.24026 0.95740 1.02293 0.96202 1.87278 1.40105 1.60778 1.23243 0.91650 0.91737 0.92376 0.90421 0.90769 0.96161 0.96646 0.92669 0.88887 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.38 37.16 0.35 -1.17 15 2 C -0.04 -0.55 3.83 -25.60 -0.10 -0.65 15 3 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 4 C -0.12 -1.93 5.25 -25.06 -0.13 -2.06 15 5 C -0.08 -1.56 2.53 -89.41 -0.23 -1.78 15 6 H 0.07 1.46 8.14 -51.93 -0.42 1.04 15 7 C 0.00 -0.06 3.42 -27.88 -0.10 -0.16 15 8 C -0.52 -14.36 9.19 -34.44 -0.32 -14.67 15 9 H 0.07 2.17 7.91 -52.49 -0.42 1.75 15 10 C 0.07 1.94 5.47 -17.82 -0.10 1.85 15 11 N -0.90 -27.38 13.96 55.43 0.77 -26.61 15 12 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 15 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 15 H -0.27 -6.17 6.54 56.52 0.37 -5.80 15 16 C -0.03 -0.66 6.27 37.82 0.24 -0.43 15 17 S -0.34 -5.79 22.73 -107.50 -2.44 -8.24 15 18 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 19 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.06 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.07 1.16 8.04 -51.93 -0.42 0.74 15 23 H 0.02 0.46 7.20 -51.93 -0.37 0.09 15 24 H 0.02 0.35 7.44 -51.93 -0.39 -0.04 15 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 26 H 0.09 1.83 7.80 -51.93 -0.41 1.43 15 27 H 0.09 1.81 8.14 -51.93 -0.42 1.39 15 LS Contribution 233.94 15.07 3.53 3.53 Total: -1.00 -29.14 233.94 -7.32 -36.46 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -4.12 Total: -2.71 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -0.38 Total: -19.07 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.77 Total: -26.61 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: -5.79 SS G_CDS: -2.44 Total: -8.24 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.14 -7.32 -36.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695270.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.438 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds