Wall clock time and date at job start Mon Mar 30 2020 01:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.75460 * 2 1 4 4 C 1.55128 * 110.85670 * 123.49405 * 2 1 3 5 5 C 1.54042 * 106.80637 * 160.10559 * 4 2 1 6 6 H 1.09004 * 109.28033 * 72.87593 * 5 4 2 7 7 C 1.52999 * 109.63459 * 193.02097 * 5 4 2 8 8 C 1.50705 * 109.47388 * 186.17083 * 7 5 4 9 9 H 1.08002 * 119.99453 * 359.97438 * 8 7 5 10 10 C 1.37874 * 120.00080 * 180.02562 * 8 7 5 11 11 N 1.31519 * 119.99757 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00102 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47293 * 90.00269 * 12 10 8 14 14 H 1.48501 * 109.46931 * 210.00164 * 12 10 8 15 15 H 1.48498 * 109.47237 * 330.00237 * 12 10 8 16 16 C 1.54274 * 109.08860 * 313.05654 * 5 4 2 17 17 S 1.83091 * 104.64945 * 27.82314 * 16 5 4 18 18 H 1.09001 * 109.47002 * 179.29696 * 1 2 3 19 19 H 1.08993 * 109.46955 * 299.30133 * 1 2 3 20 20 H 1.09000 * 109.47050 * 59.29962 * 1 2 3 21 21 H 1.08999 * 109.97931 * 279.65717 * 4 2 1 22 22 H 1.09004 * 109.97728 * 40.93732 * 4 2 1 23 23 H 1.09000 * 109.47502 * 306.16874 * 7 5 4 24 24 H 1.09000 * 109.47261 * 66.17309 * 7 5 4 25 25 H 0.97000 * 120.00175 * 180.02562 * 11 10 8 26 26 H 1.08996 * 110.40029 * 269.02947 * 16 5 4 27 27 H 1.08997 * 110.49928 * 146.66529 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9163 1.0193 0.0000 4 6 2.0824 -0.8000 1.2089 5 6 3.5367 -1.1757 0.8674 6 1 4.1629 -0.2858 0.9316 7 6 4.0406 -2.2303 1.8547 8 6 5.5064 -2.4844 1.6137 9 1 6.0264 -1.9476 0.8339 10 6 6.1833 -3.4028 2.3878 11 7 7.4626 -3.6241 2.1778 12 14 5.2837 -4.3316 3.7359 13 1 4.7196 -5.5877 3.1800 14 1 6.2328 -4.6572 4.8307 15 1 4.1837 -3.4883 4.2688 16 6 3.5879 -1.7425 -0.5666 17 16 2.1833 -0.9461 -1.4297 18 1 -0.3633 -1.0276 -0.0126 19 1 -0.3633 0.5029 0.8961 20 1 -0.3633 0.5247 -0.8836 21 1 2.0544 -0.1836 2.1075 22 1 1.4918 -1.7039 1.3585 23 1 3.8969 -1.8719 2.8740 24 1 3.4833 -3.1563 1.7131 25 1 7.9388 -4.2705 2.7221 26 1 3.4606 -2.8249 -0.5520 27 1 4.5292 -1.4778 -1.0482 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259695270.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:28 Heat of formation + Delta-G solvation = -44.837488 kcal Electronic energy + Delta-G solvation = -9603.037240 eV Core-core repulsion = 7871.170799 eV Total energy + Delta-G solvation = -1731.866440 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.25757 -35.02139 -33.42949 -29.82860 -27.58055 -25.08902 -22.36135 -21.00271 -18.96550 -17.50252 -16.60403 -16.19431 -15.18347 -15.00673 -14.48097 -14.07569 -13.91486 -13.48544 -13.20057 -12.69446 -12.62938 -12.32625 -12.10146 -11.75313 -11.65275 -11.38823 -11.16606 -10.79476 -10.66767 -8.69983 -8.28473 -6.32661 0.93414 1.36891 1.38074 1.47672 1.49531 2.36326 3.07331 3.66082 3.78539 3.99543 4.15864 4.30315 4.41265 4.67778 4.76397 4.88038 4.92640 4.99531 5.03665 5.08764 5.30160 5.33082 5.51610 5.64810 6.27494 6.74991 7.31853 8.88208 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.066057 B = 0.010621 C = 0.009668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.774771 B = 2635.726653 C = 2895.505125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.028 4.028 3 H 0.103 0.897 4 C -0.116 4.116 5 C -0.080 4.080 6 H 0.064 0.936 7 C 0.002 3.998 8 C -0.527 4.527 9 H 0.033 0.967 10 C 0.004 3.996 11 N -0.952 5.952 12 Si 0.948 3.052 13 H -0.269 1.269 14 H -0.287 1.287 15 H -0.242 1.242 16 C -0.037 4.037 17 S -0.352 6.352 18 H 0.062 0.938 19 H 0.091 0.909 20 H 0.064 0.936 21 H 0.100 0.900 22 H 0.079 0.921 23 H 0.029 0.971 24 H 0.021 0.979 25 H 0.265 0.735 26 H 0.080 0.920 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.315 5.714 -0.476 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.156 4.156 3 H 0.121 0.879 4 C -0.155 4.155 5 C -0.100 4.100 6 H 0.082 0.918 7 C -0.037 4.037 8 C -0.565 4.565 9 H 0.051 0.949 10 C -0.193 4.193 11 N -0.593 5.593 12 Si 0.771 3.229 13 H -0.194 1.194 14 H -0.212 1.212 15 H -0.165 1.165 16 C -0.185 4.185 17 S -0.126 6.126 18 H 0.081 0.919 19 H 0.110 0.890 20 H 0.083 0.917 21 H 0.119 0.881 22 H 0.097 0.903 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.545 5.554 -1.582 15.650 hybrid contribution 1.073 -0.598 1.375 1.844 sum -13.471 4.957 -0.207 14.356 Atomic orbital electron populations 1.21686 0.90131 1.03220 1.03411 1.24092 1.00114 1.00088 0.91298 0.87921 1.22761 0.93959 1.00617 0.98123 1.21831 0.96719 0.98666 0.92765 0.91794 1.19550 0.94096 0.94641 0.95419 1.21447 0.95033 1.22501 1.17522 0.94855 1.26003 0.95449 0.97786 1.00026 1.70074 1.10606 1.36420 1.42217 0.85689 0.79090 0.79424 0.78660 1.19417 1.21247 1.16518 1.23828 0.96164 1.01773 0.96742 1.87315 1.38921 1.61203 1.25128 0.91896 0.89033 0.91664 0.88135 0.90276 0.95318 0.96091 0.92589 0.90183 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.38 71.98 0.68 -1.73 15 2 C -0.03 -0.70 3.83 31.33 0.12 -0.58 15 3 H 0.10 2.41 8.14 -2.39 -0.02 2.39 15 4 C -0.12 -3.25 5.25 31.68 0.17 -3.08 15 5 C -0.08 -2.98 2.53 -10.01 -0.03 -3.01 15 6 H 0.06 2.50 8.14 -2.39 -0.02 2.48 15 7 C 0.00 0.07 3.42 29.85 0.10 0.17 15 8 C -0.53 -29.58 9.19 25.60 0.24 -29.34 15 9 H 0.03 2.07 7.91 -2.91 -0.02 2.05 15 10 C 0.00 0.23 5.47 84.65 0.46 0.69 15 11 N -0.95 -59.50 13.96 21.45 0.30 -59.20 15 12 Si 0.95 43.36 27.47 68.60 1.88 45.24 15 13 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 14 H -0.29 -12.98 7.11 99.48 0.71 -12.28 15 15 H -0.24 -10.05 6.54 99.48 0.65 -9.40 15 16 C -0.04 -1.42 6.27 72.41 0.45 -0.96 15 17 S -0.35 -11.51 22.73 -56.49 -1.28 -12.80 15 18 H 0.06 1.26 8.14 -2.39 -0.02 1.24 15 19 H 0.09 1.32 8.14 -2.39 -0.02 1.30 15 20 H 0.06 1.18 8.14 -2.39 -0.02 1.16 15 21 H 0.10 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.08 2.18 8.04 -2.39 -0.02 2.16 15 23 H 0.03 1.24 7.20 -2.39 -0.02 1.22 15 24 H 0.02 0.91 7.44 -2.39 -0.02 0.89 15 25 H 0.27 15.49 8.31 -92.71 -0.77 14.72 15 26 H 0.08 3.21 7.80 -2.39 -0.02 3.20 15 27 H 0.07 3.01 8.14 -2.39 -0.02 2.99 15 Total: -1.00 -63.45 233.94 4.15 -59.30 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.06 Total: 5.30 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 2.19 Total: -37.85 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.30 Total: -59.20 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 16 Polarization: -11.51 SS G_CDS: -1.28 Total: -12.80 kcal Total: -63.45 4.15 -59.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695270.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.460 kcal (2) G-P(sol) polarization free energy of solvation -63.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds