Wall clock time and date at job start Mon Mar 30 2020 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 111.02599 * 2 1 4 4 C 1.55159 * 111.13364 * 235.76333 * 2 1 3 5 5 C 1.52934 * 108.96139 * 200.64976 * 4 2 1 6 6 H 1.08996 * 108.88892 * 269.30259 * 5 4 2 7 7 C 1.53003 * 108.88529 * 150.89180 * 5 4 2 8 8 C 1.50706 * 109.46992 * 170.56427 * 7 5 4 9 9 H 1.07997 * 119.99717 * 0.02562 * 8 7 5 10 10 C 1.37879 * 119.99989 * 180.02562 * 8 7 5 11 11 N 1.31516 * 120.00014 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99727 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47503 * 59.99872 * 12 10 8 14 14 H 1.48506 * 109.46995 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46982 * 299.99251 * 12 10 8 16 16 C 1.53707 * 112.49291 * 30.10136 * 5 4 2 17 17 S 1.83400 * 104.96782 * 357.17229 * 16 5 4 18 18 H 1.08992 * 109.47202 * 297.21878 * 1 2 3 19 19 H 1.08999 * 109.47326 * 57.21909 * 1 2 3 20 20 H 1.08998 * 109.47094 * 177.21581 * 1 2 3 21 21 H 1.08999 * 109.60347 * 80.71788 * 4 2 1 22 22 H 1.09000 * 109.45067 * 320.49156 * 4 2 1 23 23 H 1.08996 * 109.47178 * 290.56068 * 7 5 4 24 24 H 1.08993 * 109.47296 * 50.56766 * 7 5 4 25 25 H 0.96999 * 119.99775 * 180.02562 * 11 10 8 26 26 H 1.08999 * 110.34351 * 238.30429 * 16 5 4 27 27 H 1.08996 * 110.43289 * 116.09271 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9210 1.0174 0.0000 4 6 2.0894 -0.8142 -1.1965 5 6 3.5310 -1.2221 -0.8893 6 1 4.2035 -0.4506 -1.2640 7 6 3.8387 -2.5353 -1.6116 8 6 5.3131 -2.8305 -1.5108 9 1 5.9653 -2.1499 -0.9839 10 6 5.8294 -3.9696 -2.0913 11 7 5.0351 -4.7988 -2.7326 12 14 7.6568 -4.3358 -1.9657 13 1 8.0405 -4.4562 -0.5363 14 1 7.9558 -5.6097 -2.6680 15 1 8.4271 -3.2324 -2.5939 16 6 3.7805 -1.4118 0.6155 17 16 2.1933 -0.9656 1.4188 18 1 -0.3633 0.4700 0.9138 19 1 -0.3634 0.5564 -0.8640 20 1 -0.3633 -1.0264 -0.0499 21 1 2.0668 -0.2020 -2.0980 22 1 1.4806 -1.7061 -1.3448 23 1 3.2737 -3.3450 -1.1499 24 1 3.5567 -2.4476 -2.6608 25 1 5.3983 -5.6003 -3.1407 26 1 4.5761 -0.7483 0.9543 27 1 4.0357 -2.4493 0.8311 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259695271.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:30 Heat of formation + Delta-G solvation = -29.935243 kcal Electronic energy + Delta-G solvation = -9587.796114 eV Core-core repulsion = 7856.575884 eV Total energy + Delta-G solvation = -1731.220230 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.67133 -33.23435 -31.67333 -27.34619 -26.28747 -23.58048 -21.10151 -19.20475 -16.65256 -15.88215 -14.91709 -14.48162 -13.78957 -13.47772 -12.90089 -12.37793 -12.09829 -11.68987 -11.41056 -11.23170 -10.92186 -10.79471 -10.51098 -10.36760 -10.00511 -9.41330 -9.22408 -9.04293 -8.39168 -7.25038 -6.03977 -4.07106 2.34391 2.89009 3.31046 3.35876 3.37955 4.42343 4.96506 5.12948 5.31982 5.39391 5.56104 5.72381 5.81558 5.85892 5.98877 6.14356 6.27195 6.34043 6.68805 6.77722 6.96878 7.59713 7.71772 7.93990 8.35027 8.98892 9.57414 11.07037 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.075719 B = 0.009805 C = 0.009201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.698947 B = 2855.080323 C = 3042.305703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.036 4.036 3 H 0.088 0.912 4 C -0.116 4.116 5 C -0.093 4.093 6 H 0.065 0.935 7 C 0.032 3.968 8 C -0.524 4.524 9 H 0.055 0.945 10 C 0.059 3.941 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.277 1.277 16 C -0.034 4.034 17 S -0.341 6.341 18 H 0.057 0.943 19 H 0.065 0.935 20 H 0.066 0.934 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.022 0.978 24 H 0.018 0.982 25 H 0.262 0.738 26 H 0.075 0.925 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.521 7.856 3.599 10.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.164 4.164 3 H 0.106 0.894 4 C -0.155 4.155 5 C -0.113 4.113 6 H 0.083 0.917 7 C -0.006 4.006 8 C -0.562 4.562 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.182 4.182 17 S -0.115 6.115 18 H 0.076 0.924 19 H 0.083 0.917 20 H 0.085 0.915 21 H 0.089 0.911 22 H 0.094 0.906 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.964 7.426 4.608 10.581 hybrid contribution 1.609 -0.035 -1.061 1.927 sum -4.355 7.391 3.548 9.284 Atomic orbital electron populations 1.21601 0.92522 1.02951 1.01703 1.24021 0.98334 1.00012 0.94082 0.89352 1.22603 0.96998 0.99484 0.96386 1.21708 0.94166 1.02123 0.93336 0.91656 1.19237 0.96630 0.89587 0.95123 1.21207 0.93395 1.06900 1.34680 0.92657 1.25011 0.97802 0.96230 0.95221 1.69950 1.35023 1.12585 1.35706 0.86672 0.85583 0.77567 0.78284 1.20188 1.21279 1.20256 1.24037 0.92593 1.05399 0.96170 1.87504 1.25908 1.69263 1.28847 0.92399 0.91652 0.91510 0.91083 0.90552 0.96007 0.96327 0.92872 0.90593 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.42 37.16 0.35 -1.26 15 2 C -0.04 -0.54 3.94 -25.59 -0.10 -0.64 15 3 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 4 C -0.12 -1.96 5.25 -25.62 -0.13 -2.09 15 5 C -0.09 -1.87 2.61 -90.28 -0.24 -2.11 15 6 H 0.06 1.30 8.11 -51.93 -0.42 0.88 15 7 C 0.03 0.80 4.01 -27.88 -0.11 0.68 15 8 C -0.52 -14.33 8.40 -34.44 -0.29 -14.62 15 9 H 0.06 1.46 7.65 -52.49 -0.40 1.06 15 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 11 N -0.89 -26.51 13.29 55.43 0.74 -25.77 15 12 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 15 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 16 C -0.03 -0.66 6.49 37.52 0.24 -0.42 15 17 S -0.34 -6.08 22.72 -107.50 -2.44 -8.52 15 18 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 19 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.07 0.87 8.09 -51.93 -0.42 0.45 15 21 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 22 H 0.08 1.36 7.70 -51.93 -0.40 0.96 15 23 H 0.02 0.59 8.10 -51.93 -0.42 0.17 15 24 H 0.02 0.49 8.11 -51.93 -0.42 0.07 15 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 26 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 27 H 0.11 2.29 7.37 -51.93 -0.38 1.91 15 LS Contribution 236.59 15.07 3.57 3.57 Total: -1.00 -28.86 236.59 -7.65 -36.51 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -4.12 Total: -3.25 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -0.38 Total: -18.90 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -6.08 SS G_CDS: -2.44 Total: -8.52 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.86 -7.65 -36.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695271.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.578 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds