Wall clock time and date at job start Mon Mar 30 2020 01:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 111.02599 * 2 1 4 4 C 1.55159 * 111.13364 * 235.76333 * 2 1 3 5 5 C 1.52934 * 108.96139 * 200.64976 * 4 2 1 6 6 H 1.08996 * 108.88892 * 269.30259 * 5 4 2 7 7 C 1.53003 * 108.88529 * 150.89180 * 5 4 2 8 8 C 1.50706 * 109.46992 * 170.56427 * 7 5 4 9 9 H 1.07997 * 119.99717 * 0.02562 * 8 7 5 10 10 C 1.37879 * 119.99989 * 180.02562 * 8 7 5 11 11 N 1.31516 * 120.00014 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99727 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47503 * 59.99872 * 12 10 8 14 14 H 1.48506 * 109.46995 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46982 * 299.99251 * 12 10 8 16 16 C 1.53707 * 112.49291 * 30.10136 * 5 4 2 17 17 S 1.83400 * 104.96782 * 357.17229 * 16 5 4 18 18 H 1.08992 * 109.47202 * 297.21878 * 1 2 3 19 19 H 1.08999 * 109.47326 * 57.21909 * 1 2 3 20 20 H 1.08998 * 109.47094 * 177.21581 * 1 2 3 21 21 H 1.08999 * 109.60347 * 80.71788 * 4 2 1 22 22 H 1.09000 * 109.45067 * 320.49156 * 4 2 1 23 23 H 1.08996 * 109.47178 * 290.56068 * 7 5 4 24 24 H 1.08993 * 109.47296 * 50.56766 * 7 5 4 25 25 H 0.96999 * 119.99775 * 180.02562 * 11 10 8 26 26 H 1.08999 * 110.34351 * 238.30429 * 16 5 4 27 27 H 1.08996 * 110.43289 * 116.09271 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9210 1.0174 0.0000 4 6 2.0894 -0.8142 -1.1965 5 6 3.5310 -1.2221 -0.8893 6 1 4.2035 -0.4506 -1.2640 7 6 3.8387 -2.5353 -1.6116 8 6 5.3131 -2.8305 -1.5108 9 1 5.9653 -2.1499 -0.9839 10 6 5.8294 -3.9696 -2.0913 11 7 5.0351 -4.7988 -2.7326 12 14 7.6568 -4.3358 -1.9657 13 1 8.0405 -4.4562 -0.5363 14 1 7.9558 -5.6097 -2.6680 15 1 8.4271 -3.2324 -2.5939 16 6 3.7805 -1.4118 0.6155 17 16 2.1933 -0.9656 1.4188 18 1 -0.3633 0.4700 0.9138 19 1 -0.3634 0.5564 -0.8640 20 1 -0.3633 -1.0264 -0.0499 21 1 2.0668 -0.2020 -2.0980 22 1 1.4806 -1.7061 -1.3448 23 1 3.2737 -3.3450 -1.1499 24 1 3.5567 -2.4476 -2.6608 25 1 5.3983 -5.6003 -3.1407 26 1 4.5761 -0.7483 0.9543 27 1 4.0357 -2.4493 0.8311 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259695271.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:29 Heat of formation + Delta-G solvation = -45.837378 kcal Electronic energy + Delta-G solvation = -9588.485683 eV Core-core repulsion = 7856.575884 eV Total energy + Delta-G solvation = -1731.909799 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.24383 -35.05929 -33.30849 -29.24175 -27.69471 -25.41650 -22.55379 -20.82466 -18.59349 -17.44561 -16.65836 -16.21333 -15.21746 -14.89333 -14.35432 -14.17273 -13.44772 -13.42951 -13.16972 -12.76879 -12.63161 -12.26151 -12.13999 -12.11977 -11.56312 -11.21842 -11.06034 -10.72490 -10.51939 -8.67546 -8.19926 -6.30486 0.99106 1.40206 1.42220 1.46123 1.50095 2.40549 3.14012 3.66748 3.83950 4.07650 4.19293 4.30048 4.45047 4.64980 4.83226 4.89167 4.95731 5.06394 5.14844 5.23135 5.30784 5.48951 5.66998 5.81742 6.22248 6.85126 7.38745 8.91571 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.075719 B = 0.009805 C = 0.009201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.698947 B = 2855.080323 C = 3042.305703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.020 4.020 3 H 0.110 0.890 4 C -0.113 4.113 5 C -0.087 4.087 6 H 0.070 0.930 7 C 0.040 3.960 8 C -0.537 4.537 9 H 0.062 0.938 10 C 0.002 3.998 11 N -0.933 5.933 12 Si 0.960 3.040 13 H -0.268 1.268 14 H -0.285 1.285 15 H -0.266 1.266 16 C -0.033 4.033 17 S -0.360 6.360 18 H 0.069 0.931 19 H 0.093 0.907 20 H 0.056 0.944 21 H 0.093 0.907 22 H 0.061 0.939 23 H -0.010 1.010 24 H -0.005 1.005 25 H 0.263 0.737 26 H 0.089 0.911 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 9.460 3.879 11.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 H 0.128 0.872 4 C -0.152 4.152 5 C -0.107 4.107 6 H 0.089 0.911 7 C 0.002 3.998 8 C -0.575 4.575 9 H 0.081 0.919 10 C -0.196 4.196 11 N -0.574 5.574 12 Si 0.785 3.215 13 H -0.193 1.193 14 H -0.211 1.211 15 H -0.191 1.191 16 C -0.181 4.181 17 S -0.134 6.134 18 H 0.087 0.913 19 H 0.111 0.889 20 H 0.075 0.925 21 H 0.111 0.889 22 H 0.080 0.920 23 H 0.008 0.992 24 H 0.013 0.987 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.838 9.047 4.898 11.829 hybrid contribution 1.508 -0.523 -1.159 1.972 sum -4.330 8.524 3.739 10.266 Atomic orbital electron populations 1.21627 0.90278 1.03030 1.03567 1.24175 0.99996 0.99892 0.90764 0.87179 1.22524 0.94598 0.99749 0.98349 1.21608 0.96566 0.99256 0.93230 0.91137 1.19074 0.95311 0.91432 0.93995 1.21638 0.94637 1.07048 1.34207 0.91943 1.25930 1.02682 0.96143 0.94881 1.70087 1.37211 1.13178 1.36875 0.85569 0.79774 0.77545 0.78597 1.19341 1.21092 1.19079 1.23842 0.94220 1.04105 0.95955 1.87568 1.25140 1.70179 1.30485 0.91250 0.88878 0.92487 0.88888 0.91984 0.99173 0.98656 0.92838 0.89223 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.42 71.98 0.68 -2.06 15 2 C -0.02 -0.55 3.94 31.33 0.12 -0.43 15 3 H 0.11 2.60 8.14 -2.39 -0.02 2.58 15 4 C -0.11 -3.66 5.25 31.31 0.16 -3.49 15 5 C -0.09 -3.44 2.61 -10.58 -0.03 -3.47 15 6 H 0.07 2.72 8.11 -2.39 -0.02 2.70 15 7 C 0.04 2.03 4.01 29.85 0.12 2.15 15 8 C -0.54 -29.74 8.40 25.60 0.21 -29.52 15 9 H 0.06 3.29 7.65 -2.91 -0.02 3.27 15 10 C 0.00 0.09 5.46 84.65 0.46 0.55 15 11 N -0.93 -56.53 13.29 21.45 0.28 -56.25 15 12 Si 0.96 43.89 29.54 68.60 2.03 45.92 15 13 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 14 H -0.29 -12.87 7.11 99.48 0.71 -12.16 15 15 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 16 C -0.03 -1.28 6.49 72.22 0.47 -0.81 15 17 S -0.36 -12.36 22.72 -56.49 -1.28 -13.65 15 18 H 0.07 1.37 8.14 -2.39 -0.02 1.35 15 19 H 0.09 1.55 8.14 -2.39 -0.02 1.53 15 20 H 0.06 1.35 8.09 -2.39 -0.02 1.34 15 21 H 0.09 2.61 8.14 -2.39 -0.02 2.59 15 22 H 0.06 2.18 7.70 -2.39 -0.02 2.17 15 23 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 15 24 H 0.00 -0.27 8.11 -2.39 -0.02 -0.29 15 25 H 0.26 15.05 8.31 -92.71 -0.77 14.28 15 26 H 0.09 3.15 8.14 -2.39 -0.02 3.13 15 27 H 0.08 3.45 7.37 -2.39 -0.02 3.43 15 Total: -1.00 -62.13 236.59 4.35 -57.78 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.12 Total: 3.27 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 2.20 Total: -37.08 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.28 Total: -56.25 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -12.36 SS G_CDS: -1.28 Total: -13.65 kcal Total: -62.13 4.35 -57.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695271.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.943 kcal (2) G-P(sol) polarization free energy of solvation -62.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds