Wall clock time and date at job start Mon Mar 30 2020 01:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.08999 * 108.77961 * 54.29767 * 10 9 7 12 12 C 1.54357 * 108.82249 * 172.72465 * 10 9 7 13 13 S 1.83844 * 102.22708 * 144.97964 * 12 10 9 14 14 C 1.83997 * 94.42385 * 326.15893 * 13 12 10 15 15 C 1.49904 * 108.82445 * 295.87509 * 10 9 7 16 16 O 1.20769 * 123.27374 * 59.49338 * 15 10 9 17 17 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 18 18 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 19 19 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 20 20 H 1.09005 * 110.86613 * 263.06066 * 12 10 9 21 21 H 1.08989 * 110.87107 * 26.73921 * 12 10 9 22 22 H 1.09004 * 110.77786 * 275.92017 * 14 13 12 23 23 H 1.08994 * 110.78109 * 152.49046 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9311 -3.5374 0.8385 12 6 1.4674 -4.9824 0.1856 13 16 2.4350 -6.1528 -0.8507 14 6 2.8854 -4.8888 -2.1096 15 6 3.0303 -3.6273 -1.2761 16 8 3.7118 -2.6877 -1.6095 17 1 -0.4850 -0.8401 -0.0004 18 1 0.6241 -2.5566 0.8903 19 1 0.6247 -2.5571 -0.8897 20 1 1.4747 -5.2942 1.2300 21 1 0.4470 -4.8871 -0.1853 22 1 2.0900 -4.7763 -2.8464 23 1 3.8285 -5.1435 -2.5931 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259746405.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:01 Heat of formation + Delta-G solvation = -71.406747 kcal Electronic energy + Delta-G solvation = -9525.060464 eV Core-core repulsion = 7656.208799 eV Total energy + Delta-G solvation = -1868.851664 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.72042 -36.64530 -34.62559 -31.01301 -28.78973 -25.48581 -24.07492 -20.29872 -19.12269 -17.89676 -16.96457 -16.74605 -15.67201 -15.42556 -15.05725 -14.70820 -14.21828 -13.50669 -13.34794 -13.10708 -12.97903 -12.56227 -12.07246 -11.94715 -11.33981 -10.84729 -10.58931 -10.37086 -8.86559 -8.67013 -6.36594 0.56119 0.88194 1.15284 1.49549 1.57077 1.77171 2.53794 2.87220 3.15521 3.48720 3.86951 3.93016 4.12340 4.42759 4.57504 4.68053 4.75974 5.13951 5.22021 5.95121 6.20573 6.37450 6.61225 7.39888 8.74090 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.072140 B = 0.011701 C = 0.010600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.041156 B = 2392.479117 C = 2640.928125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.035 4.035 3 Si 1.109 2.891 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.280 1.280 7 C -0.610 4.610 8 H 0.051 0.949 9 C 0.027 3.973 10 C -0.141 4.141 11 H 0.101 0.899 12 C -0.048 4.048 13 S -0.269 6.269 14 C -0.122 4.122 15 C 0.374 3.626 16 O -0.454 6.454 17 H 0.258 0.742 18 H 0.017 0.983 19 H -0.003 1.003 20 H 0.130 0.870 21 H 0.102 0.898 22 H 0.137 0.863 23 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 -10.324 -1.369 11.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.232 4.232 3 Si 0.932 3.068 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.206 1.206 7 C -0.648 4.648 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.161 4.161 11 H 0.119 0.881 12 C -0.196 4.196 13 S -0.043 6.043 14 C -0.270 4.270 15 C 0.247 3.753 16 O -0.327 6.327 17 H 0.067 0.933 18 H 0.035 0.965 19 H 0.015 0.985 20 H 0.148 0.852 21 H 0.120 0.880 22 H 0.154 0.846 23 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.158 -9.427 -1.431 10.402 hybrid contribution -0.321 -0.445 -0.096 0.557 sum 3.837 -9.872 -1.527 10.701 Atomic orbital electron populations 1.70933 1.07670 1.29917 1.49149 1.27151 0.96615 1.06370 0.93114 0.83016 0.74217 0.71899 0.77701 1.20546 1.19375 1.20627 1.22478 0.94920 0.93144 1.54219 0.93066 1.19109 0.93803 0.92328 0.95870 1.21958 0.99063 0.96506 0.98566 0.88105 1.24204 1.00365 0.91505 1.03506 1.87789 1.68691 1.18711 1.29063 1.24722 1.08806 0.93523 0.99930 1.24913 0.77244 0.86092 0.87088 1.90412 1.33890 1.36429 1.71951 0.93286 0.96467 0.98507 0.85191 0.87968 0.84553 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.60 13.65 21.45 0.29 -57.30 14 2 C -0.03 -2.03 5.46 84.65 0.46 -1.57 14 3 Si 1.11 52.20 29.90 68.60 2.05 54.25 14 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 14 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 14 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 14 7 C -0.61 -34.73 8.08 25.60 0.21 -34.53 14 8 H 0.05 2.99 6.54 -2.91 -0.02 2.97 14 9 C 0.03 1.32 3.54 29.85 0.11 1.43 14 10 C -0.14 -5.33 2.56 -11.33 -0.03 -5.36 14 11 H 0.10 3.90 8.13 -2.39 -0.02 3.88 14 12 C -0.05 -1.37 6.94 72.44 0.50 -0.87 14 13 S -0.27 -7.16 23.29 -56.49 -1.32 -8.48 14 14 C -0.12 -3.34 7.37 71.62 0.53 -2.81 14 15 C 0.37 14.28 6.60 29.24 0.19 14.48 14 16 O -0.45 -21.22 15.80 -1.48 -0.02 -21.24 14 17 H 0.26 15.67 7.22 -92.71 -0.67 15.00 14 18 H 0.02 0.85 8.00 -2.39 -0.02 0.83 14 19 H 0.00 -0.17 8.01 -2.38 -0.02 -0.19 14 20 H 0.13 3.13 8.14 -2.38 -0.02 3.11 14 21 H 0.10 2.82 7.85 -2.39 -0.02 2.80 14 22 H 0.14 3.35 8.14 -2.38 -0.02 3.33 14 23 H 0.14 3.35 8.14 -2.39 -0.02 3.33 14 Total: -1.00 -66.57 214.71 4.27 -62.30 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: 1.30 Total: -0.29 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 1.97 Total: -29.24 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.29 Total: -57.30 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.02 Total: -21.24 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 2.05 Total: 54.25 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -1.32 Total: -8.48 kcal Total: -66.57 4.27 -62.30 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259746405.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.111 kcal (2) G-P(sol) polarization free energy of solvation -66.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds