Wall clock time and date at job start Mon Mar 30 2020 01:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32531 * 124.51481 * 2 1 4 4 C 1.44768 * 113.19971 * 180.26662 * 3 2 1 5 5 C 1.41145 * 123.69393 * 179.72816 * 4 3 2 6 6 H 1.07997 * 120.00261 * 200.40209 * 5 4 3 7 7 C 1.39612 * 119.99743 * 20.39782 * 5 4 3 8 8 N 1.31148 * 119.99947 * 11.14151 * 7 5 4 9 9 Si 1.86795 * 119.99964 * 191.14148 * 7 5 4 10 10 H 1.48495 * 109.47201 * 90.00038 * 9 7 5 11 11 H 1.48500 * 109.47471 * 210.00280 * 9 7 5 12 12 H 1.48509 * 109.46985 * 329.99918 * 9 7 5 13 13 C 1.37939 * 112.61508 * 359.50965 * 4 3 2 14 14 F 1.35104 * 124.69381 * 180.19290 * 13 4 3 15 15 S 1.70436 * 110.60827 * 0.47075 * 13 4 3 16 16 H 1.08998 * 109.47043 * 90.00187 * 1 2 3 17 17 H 1.08997 * 109.47234 * 210.00726 * 1 2 3 18 18 H 1.09003 * 109.47161 * 330.00398 * 1 2 3 19 19 H 1.08007 * 123.40089 * 359.97438 * 3 2 1 20 20 H 0.96993 * 119.99510 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2579 1.0920 0.0000 4 6 3.6774 0.8080 -0.0062 5 6 4.6756 1.8059 -0.0130 6 1 5.6757 1.5671 -0.3433 7 6 4.3700 3.1017 0.4073 8 7 3.2307 3.3440 1.0101 9 14 5.5838 4.4903 0.1111 10 1 5.3057 5.1184 -1.2055 11 1 5.4441 5.5073 1.1841 12 1 6.9667 3.9491 0.1192 13 6 3.9477 -0.5446 0.0001 14 9 5.1877 -1.0810 0.0001 15 16 2.5010 -1.4455 0.0002 16 1 -0.3633 0.0000 -1.0276 17 1 -0.3633 -0.8899 0.5139 18 1 -0.3634 0.8900 0.5138 19 1 1.8518 2.0929 -0.0004 20 1 3.0187 4.2442 1.3024 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259869968.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:28 Heat of formation + Delta-G solvation = -36.650882 kcal Electronic energy + Delta-G solvation = -9138.409849 eV Core-core repulsion = 7147.605007 eV Total energy + Delta-G solvation = -1990.804842 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.021 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -46.93506 -36.39216 -33.21297 -30.53955 -26.55660 -24.56460 -21.03958 -18.67673 -17.15181 -16.00623 -15.31043 -14.03576 -13.98429 -13.21209 -12.88494 -12.80815 -12.22978 -11.82030 -11.55999 -11.33441 -10.72107 -10.41261 -10.20244 -9.91365 -9.45616 -9.07722 -7.20756 -7.16891 -6.81081 -4.38212 2.39821 2.87673 2.99193 3.04233 3.09364 3.45346 3.89784 3.95443 5.16959 5.82414 5.99379 6.15164 6.42020 6.52903 7.02668 7.24706 7.36265 7.62162 7.73557 8.33946 8.62536 8.76358 10.11676 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.049770 B = 0.015525 C = 0.012099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.457763 B = 1803.122805 C = 2313.762362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.209 4.209 3 C -0.078 4.078 4 C 0.071 3.929 5 C -0.429 4.429 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.806 5.806 9 Si 0.921 3.079 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.261 1.261 13 C -0.246 4.246 14 F -0.137 7.137 15 S 0.015 5.985 16 H 0.059 0.941 17 H 0.056 0.944 18 H 0.066 0.934 19 H 0.154 0.846 20 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 -0.211 -1.192 3.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.325 4.325 3 C -0.110 4.110 4 C 0.059 3.941 5 C -0.462 4.462 6 H 0.099 0.901 7 C -0.144 4.144 8 N -0.433 5.433 9 Si 0.745 3.255 10 H -0.192 1.192 11 H -0.201 1.201 12 H -0.185 1.185 13 C -0.380 4.380 14 F -0.117 7.117 15 S 0.272 5.728 16 H 0.078 0.922 17 H 0.075 0.925 18 H 0.085 0.915 19 H 0.171 0.829 20 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.837 -1.557 -1.075 4.278 hybrid contribution 1.234 2.064 -0.033 2.405 sum -2.604 0.507 -1.109 2.875 Atomic orbital electron populations 1.20162 0.89539 1.01767 1.01230 1.23702 0.98263 0.95635 1.14899 1.21483 0.92412 0.98589 0.98524 1.18093 0.92971 0.90039 0.93013 1.19104 0.97289 0.92654 1.37148 0.90064 1.25941 0.96086 1.00090 0.92257 1.69855 1.22260 1.22955 1.28189 0.86095 0.81060 0.79471 0.78864 1.19195 1.20126 1.18515 1.20727 0.82442 0.93699 1.41160 1.91176 1.38200 1.85593 1.96746 1.81817 0.97326 1.10797 1.82906 0.92225 0.92542 0.91470 0.82896 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.33 36.00 0.37 -0.79 14 2 C -0.21 -4.70 6.42 -36.22 -0.23 -4.93 14 3 C -0.08 -1.98 8.97 -38.92 -0.35 -2.33 14 4 C 0.07 1.99 5.69 -106.32 -0.60 1.38 14 5 C -0.43 -11.93 9.15 -37.97 -0.35 -12.27 14 6 H 0.08 2.25 7.87 -52.49 -0.41 1.84 14 7 C 0.07 1.85 5.38 -17.33 -0.09 1.76 14 8 N -0.81 -20.40 10.73 55.53 0.60 -19.80 14 9 Si 0.92 18.89 29.57 -169.99 -5.03 13.86 14 10 H -0.27 -5.34 7.11 56.52 0.40 -4.94 14 11 H -0.28 -5.48 7.11 56.52 0.40 -5.07 14 12 H -0.26 -5.39 7.11 56.52 0.40 -4.99 14 13 C -0.25 -6.77 8.11 30.62 0.25 -6.52 14 14 F -0.14 -3.82 17.22 2.25 0.04 -3.78 14 15 S 0.02 0.35 22.98 -107.50 -2.47 -2.12 14 16 H 0.06 0.91 8.14 -51.93 -0.42 0.49 14 17 H 0.06 0.87 8.14 -51.93 -0.42 0.44 14 18 H 0.07 1.08 8.14 -51.93 -0.42 0.66 14 19 H 0.15 3.85 6.29 -52.48 -0.33 3.52 14 20 H 0.28 6.43 8.30 -40.82 -0.34 6.09 14 LS Contribution 202.76 15.07 3.06 3.06 Total: -1.00 -28.48 202.76 -5.96 -34.44 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -1.15 Total: -1.96 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -1.01 Total: -23.71 kcal Atomic # 7 Polarization: -20.40 SS G_CDS: 0.60 Total: -19.80 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -2.47 Total: -2.12 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -28.48 -5.96 -34.44 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869968.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.208 kcal (2) G-P(sol) polarization free energy of solvation -28.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds