Wall clock time and date at job start Mon Mar 30 2020 01:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32531 * 124.51481 * 2 1 4 4 C 1.44768 * 113.19971 * 180.26662 * 3 2 1 5 5 C 1.41145 * 123.69393 * 179.72816 * 4 3 2 6 6 H 1.07997 * 120.00261 * 200.40209 * 5 4 3 7 7 C 1.39612 * 119.99743 * 20.39782 * 5 4 3 8 8 N 1.31148 * 119.99947 * 11.14151 * 7 5 4 9 9 Si 1.86795 * 119.99964 * 191.14148 * 7 5 4 10 10 H 1.48495 * 109.47201 * 90.00038 * 9 7 5 11 11 H 1.48500 * 109.47471 * 210.00280 * 9 7 5 12 12 H 1.48509 * 109.46985 * 329.99918 * 9 7 5 13 13 C 1.37939 * 112.61508 * 359.50965 * 4 3 2 14 14 F 1.35104 * 124.69381 * 180.19290 * 13 4 3 15 15 S 1.70436 * 110.60827 * 0.47075 * 13 4 3 16 16 H 1.08998 * 109.47043 * 90.00187 * 1 2 3 17 17 H 1.08997 * 109.47234 * 210.00726 * 1 2 3 18 18 H 1.09003 * 109.47161 * 330.00398 * 1 2 3 19 19 H 1.08007 * 123.40089 * 359.97438 * 3 2 1 20 20 H 0.96993 * 119.99510 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2579 1.0920 0.0000 4 6 3.6774 0.8080 -0.0062 5 6 4.6756 1.8059 -0.0130 6 1 5.6757 1.5671 -0.3433 7 6 4.3700 3.1017 0.4073 8 7 3.2307 3.3440 1.0101 9 14 5.5838 4.4903 0.1111 10 1 5.3057 5.1184 -1.2055 11 1 5.4441 5.5073 1.1841 12 1 6.9667 3.9491 0.1192 13 6 3.9477 -0.5446 0.0001 14 9 5.1877 -1.0810 0.0001 15 16 2.5010 -1.4455 0.0002 16 1 -0.3633 0.0000 -1.0276 17 1 -0.3633 -0.8899 0.5139 18 1 -0.3634 0.8900 0.5138 19 1 1.8518 2.0929 -0.0004 20 1 3.0187 4.2442 1.3024 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259869968.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:27 Heat of formation + Delta-G solvation = -53.215561 kcal Electronic energy + Delta-G solvation = -9139.128148 eV Core-core repulsion = 7147.605007 eV Total energy + Delta-G solvation = -1991.523140 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.021 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -49.03401 -38.30751 -35.12350 -32.30810 -28.43554 -26.43239 -22.92961 -20.59107 -19.15939 -17.95172 -17.23604 -16.08443 -15.81848 -15.03215 -14.78939 -14.35114 -13.96466 -13.57564 -13.32337 -13.01752 -12.41947 -12.20914 -11.95143 -11.85905 -11.33009 -10.98143 -9.17318 -9.05456 -8.72929 -6.44032 0.47508 1.02985 1.33589 1.36363 1.48280 1.54692 2.03918 2.18378 3.13718 4.17321 4.52370 4.65337 4.86918 5.04117 5.10622 5.34907 5.47415 5.61833 5.80020 6.27452 6.58510 6.74357 8.21448 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.049770 B = 0.015525 C = 0.012099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.457763 B = 1803.122805 C = 2313.762362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.185 4.185 3 C -0.116 4.116 4 C 0.046 3.954 5 C -0.471 4.471 6 H 0.064 0.936 7 C 0.039 3.961 8 N -0.818 5.818 9 Si 0.995 3.005 10 H -0.254 1.254 11 H -0.257 1.257 12 H -0.268 1.268 13 C -0.306 4.306 14 F -0.152 7.152 15 S 0.060 5.940 16 H 0.085 0.915 17 H 0.079 0.921 18 H 0.080 0.920 19 H 0.151 0.849 20 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 0.696 -1.166 4.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.301 4.301 3 C -0.147 4.147 4 C 0.034 3.966 5 C -0.503 4.503 6 H 0.083 0.917 7 C -0.177 4.177 8 N -0.444 5.444 9 Si 0.815 3.185 10 H -0.179 1.179 11 H -0.181 1.181 12 H -0.192 1.192 13 C -0.439 4.439 14 F -0.132 7.132 15 S 0.317 5.683 16 H 0.104 0.896 17 H 0.098 0.902 18 H 0.099 0.901 19 H 0.168 0.832 20 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.155 -0.669 -1.043 5.302 hybrid contribution 1.560 1.774 -0.012 2.363 sum -3.595 1.105 -1.055 3.906 Atomic orbital electron populations 1.20370 0.85302 1.03616 1.03459 1.24442 1.00902 0.94478 1.10292 1.21377 0.91467 0.99460 1.02436 1.18615 0.94717 0.90582 0.92698 1.19323 0.96946 0.94682 1.39368 0.91733 1.26794 0.98185 1.01631 0.91140 1.69859 1.23202 1.24409 1.26925 0.85012 0.77818 0.76031 0.79687 1.17866 1.18138 1.19226 1.21324 0.83559 0.95123 1.43905 1.91114 1.39278 1.85747 1.97025 1.81447 0.94583 1.09944 1.82350 0.89643 0.90177 0.90105 0.83174 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.09 10.33 71.23 0.74 -1.35 14 2 C -0.19 -7.99 6.42 24.54 0.16 -7.83 14 3 C -0.12 -5.87 8.97 22.80 0.20 -5.66 14 4 C 0.05 2.65 5.69 -20.97 -0.12 2.53 14 5 C -0.47 -27.01 9.15 23.32 0.21 -26.80 14 6 H 0.06 3.76 7.87 -2.91 -0.02 3.74 14 7 C 0.04 1.96 5.38 85.13 0.46 2.41 14 8 N -0.82 -40.94 10.73 21.78 0.23 -40.70 14 9 Si 0.99 38.19 29.57 68.60 2.03 40.22 14 10 H -0.25 -9.24 7.11 99.48 0.71 -8.53 14 11 H -0.26 -9.07 7.11 99.48 0.71 -8.36 14 12 H -0.27 -10.50 7.11 99.48 0.71 -9.79 14 13 C -0.31 -17.25 8.11 67.75 0.55 -16.70 14 14 F -0.15 -8.77 17.22 44.97 0.77 -7.99 14 15 S 0.06 2.74 22.98 -56.49 -1.30 1.44 14 16 H 0.09 2.25 8.14 -2.39 -0.02 2.23 14 17 H 0.08 2.10 8.14 -2.39 -0.02 2.08 14 18 H 0.08 2.30 8.14 -2.39 -0.02 2.28 14 19 H 0.15 7.55 6.29 -2.91 -0.02 7.53 14 20 H 0.30 13.05 8.30 -92.71 -0.77 12.28 14 Total: -1.00 -62.18 202.76 5.19 -56.99 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 1.25 Total: 3.46 kcal Atomic # 6 Polarization: -55.61 SS G_CDS: 2.20 Total: -53.41 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.23 Total: -40.70 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 0.77 Total: -7.99 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.30 Total: 1.44 kcal Total: -62.18 5.19 -56.99 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869968.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.778 kcal (2) G-P(sol) polarization free energy of solvation -62.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds