Wall clock time and date at job start Mon Mar 30 2020 01:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 110.30360 * 2 1 4 4 C 1.53707 * 110.34162 * 122.17185 * 2 1 3 5 5 C 1.52945 * 112.49105 * 121.69668 * 4 2 1 6 6 H 1.09001 * 109.60021 * 89.82950 * 5 4 2 7 7 C 1.50701 * 109.60257 * 209.96812 * 5 4 2 8 8 H 1.07997 * 119.99742 * 0.99465 * 7 5 4 9 9 C 1.37875 * 119.99698 * 180.98878 * 7 5 4 10 10 N 1.31518 * 120.00206 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 119.99963 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47031 * 60.00255 * 11 9 7 13 13 H 1.48501 * 109.47273 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47108 * 300.00567 * 11 9 7 15 15 C 1.55150 * 108.96034 * 329.90167 * 5 4 2 16 16 S 1.83456 * 110.30136 * 237.71345 * 2 1 3 17 17 H 1.09003 * 109.46863 * 297.82627 * 1 2 3 18 18 H 1.09001 * 109.46860 * 57.83103 * 1 2 3 19 19 H 1.08996 * 109.46650 * 177.82593 * 1 2 3 20 20 H 1.08996 * 109.47482 * 182.17061 * 3 2 1 21 21 H 1.09001 * 109.47405 * 302.17270 * 3 2 1 22 22 H 1.09001 * 109.46782 * 62.17252 * 3 2 1 23 23 H 1.09004 * 108.88799 * 0.90417 * 4 2 1 24 24 H 1.09003 * 108.88530 * 242.49350 * 4 2 1 25 25 H 0.96995 * 120.00238 * 179.97438 * 10 9 7 26 26 H 1.09002 * 111.13093 * 159.34970 * 15 5 4 27 27 H 1.08998 * 111.13063 * 283.48282 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0610 1.4349 0.0000 4 6 2.0644 -0.7674 1.2199 5 6 2.9639 -1.9398 0.8256 6 1 3.9978 -1.6010 0.7586 7 6 2.8588 -3.0287 1.8621 8 1 2.2017 -2.9051 2.7103 9 6 3.6014 -4.1825 1.7275 10 7 4.4018 -4.3327 0.6949 11 14 3.4716 -5.5319 3.0127 12 1 2.0690 -6.0143 3.0840 13 1 4.3646 -6.6583 2.6396 14 1 3.8785 -4.9957 4.3363 15 6 2.5049 -2.4863 -0.5520 16 16 2.1666 -0.9191 -1.4546 17 1 -0.3633 0.4797 0.9089 18 1 -0.3633 0.5472 -0.8699 19 1 -0.3632 -1.0269 -0.0390 20 1 3.1501 1.4194 -0.0389 21 1 1.6739 1.9656 -0.8699 22 1 1.7371 1.9421 0.9088 23 1 1.2201 -1.1482 1.7947 24 1 2.6336 -0.0811 1.8469 25 1 4.9245 -5.1443 0.6004 26 1 3.3007 -3.0538 -1.0346 27 1 1.6006 -3.0869 -0.4549 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887546.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:24 Heat of formation + Delta-G solvation = -40.618295 kcal Electronic energy + Delta-G solvation = -9855.134338 eV Core-core repulsion = 8123.450856 eV Total energy + Delta-G solvation = -1731.683482 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.25392 -35.32218 -32.65991 -28.26784 -27.46219 -27.01733 -22.56089 -20.70510 -18.48378 -17.20004 -16.28728 -15.90212 -15.18679 -14.70350 -14.41353 -14.02008 -13.63692 -13.14711 -12.91985 -12.88278 -12.67016 -12.30910 -12.21507 -11.84320 -11.55340 -11.24693 -11.10509 -10.65532 -10.38665 -8.60088 -8.17003 -6.31534 1.16940 1.42699 1.43154 1.51693 1.65202 2.40710 3.12585 3.88080 3.92548 4.17859 4.48558 4.59476 4.73710 4.78155 4.81610 4.94125 4.96722 5.03870 5.13577 5.22633 5.38855 5.49528 5.66924 5.81755 6.19811 6.77382 7.37529 8.89306 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.065165 B = 0.012356 C = 0.011467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.573462 B = 2265.633867 C = 2441.142019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.000 4.000 3 C -0.121 4.121 4 C -0.108 4.108 5 C 0.043 3.957 6 H 0.004 0.996 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.014 3.986 10 N -0.918 5.918 11 Si 0.960 3.040 12 H -0.269 1.269 13 H -0.286 1.286 14 H -0.269 1.269 15 C -0.009 4.009 16 S -0.388 6.388 17 H 0.083 0.917 18 H 0.068 0.932 19 H 0.046 0.954 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.088 0.912 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.264 0.736 26 H 0.078 0.922 27 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 7.037 0.888 9.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.110 4.110 3 C -0.179 4.179 4 C -0.147 4.147 5 C 0.023 3.977 6 H 0.023 0.977 7 C -0.572 4.572 8 H 0.081 0.919 9 C -0.186 4.186 10 N -0.557 5.557 11 Si 0.785 3.215 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.194 1.194 15 C -0.157 4.157 16 S -0.160 6.160 17 H 0.102 0.898 18 H 0.087 0.913 19 H 0.066 0.934 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.107 0.893 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.786 7.241 -0.392 9.277 hybrid contribution 0.259 -1.462 1.431 2.062 sum -5.527 5.779 1.039 8.064 Atomic orbital electron populations 1.21949 0.90989 1.02096 1.03080 1.23337 0.98854 0.97522 0.91244 1.21798 1.00958 0.91926 1.03228 1.22183 0.99669 0.96475 0.96330 1.19441 0.94305 0.92608 0.91390 0.97728 1.21468 1.25592 1.01952 1.08219 0.91925 1.25834 0.94449 1.00755 0.97554 1.70047 1.27246 1.27994 1.30400 0.85569 0.78242 0.78293 0.79357 1.19360 1.21122 1.19399 1.24272 1.01563 0.92299 0.97557 1.87250 1.85753 1.18830 1.24156 0.89786 0.91264 0.93440 0.92968 0.91458 0.89340 0.91583 0.91243 0.92726 0.90323 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.49 8.37 71.98 0.60 -2.89 15 2 C 0.00 -0.01 1.17 -10.55 -0.01 -0.03 15 3 C -0.12 -3.39 8.38 71.98 0.60 -2.79 15 4 C -0.11 -4.32 5.25 30.81 0.16 -4.15 15 5 C 0.04 2.15 2.44 -10.82 -0.03 2.13 15 6 H 0.00 0.25 8.14 -2.39 -0.02 0.24 15 7 C -0.53 -28.58 8.43 25.60 0.22 -28.36 15 8 H 0.06 3.23 7.53 -2.91 -0.02 3.21 15 9 C 0.01 0.76 5.31 84.65 0.45 1.21 15 10 N -0.92 -52.69 11.85 21.45 0.25 -52.44 15 11 Si 0.96 42.53 29.54 68.60 2.03 44.55 15 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 13 H -0.29 -12.53 7.11 99.48 0.71 -11.82 15 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 15 C -0.01 -0.43 6.21 72.72 0.45 0.02 15 16 S -0.39 -16.37 22.11 -56.49 -1.25 -17.62 15 17 H 0.08 1.97 8.14 -2.39 -0.02 1.95 15 18 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 19 H 0.05 1.49 8.14 -2.39 -0.02 1.47 15 20 H 0.05 1.59 8.14 -2.39 -0.02 1.57 15 21 H 0.07 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 23 H 0.07 2.58 7.10 -2.38 -0.02 2.56 15 24 H 0.07 2.59 7.62 -2.39 -0.02 2.58 15 25 H 0.26 14.44 8.31 -92.71 -0.77 13.67 15 26 H 0.08 4.31 7.13 -2.39 -0.02 4.29 15 27 H 0.06 2.93 8.10 -2.39 -0.02 2.91 15 Total: -1.00 -58.53 233.17 4.60 -53.93 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.12 Total: 6.44 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 2.45 Total: -34.87 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.25 Total: -52.44 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -16.37 SS G_CDS: -1.25 Total: -17.62 kcal Total: -58.53 4.60 -53.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887546.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.311 kcal (2) G-P(sol) polarization free energy of solvation -58.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds