Wall clock time and date at job start Mon Mar 30 2020 01:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.36102 * 2 1 4 4 C 1.54277 * 110.40031 * 237.67577 * 2 1 3 5 5 C 1.54020 * 108.84323 * 213.34823 * 4 2 1 6 6 H 1.09007 * 109.92288 * 287.72619 * 5 4 2 7 7 C 1.50692 * 109.98015 * 166.51645 * 5 4 2 8 8 H 1.07998 * 120.00163 * 0.97948 * 7 5 4 9 9 C 1.37880 * 120.00298 * 180.97423 * 7 5 4 10 10 N 1.31512 * 119.99998 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00074 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47136 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47329 * 120.00088 * 11 9 7 14 14 H 1.48501 * 109.46817 * 239.99838 * 11 9 7 15 15 C 1.55134 * 106.98428 * 47.10324 * 5 4 2 16 16 S 1.83097 * 110.40176 * 122.32769 * 2 1 3 17 17 H 1.09002 * 109.47153 * 60.69790 * 1 2 3 18 18 H 1.09001 * 109.46832 * 300.69981 * 1 2 3 19 19 H 1.09004 * 109.47261 * 180.69962 * 1 2 3 20 20 H 1.09003 * 109.46785 * 59.30026 * 3 2 1 21 21 H 1.08996 * 109.47115 * 179.29647 * 3 2 1 22 22 H 1.08992 * 109.47249 * 299.30435 * 3 2 1 23 23 H 1.09001 * 109.61264 * 333.17614 * 4 2 1 24 24 H 1.09005 * 109.60570 * 93.33964 * 4 2 1 25 25 H 0.96996 * 120.00363 * 180.02562 * 10 9 7 26 26 H 1.09004 * 110.85902 * 199.75689 * 15 5 4 27 27 H 1.09004 * 110.85880 * 76.11898 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0623 1.4344 0.0000 4 6 2.0677 -0.7732 -1.2219 5 6 3.3824 -1.4727 -0.8288 6 1 4.1784 -0.7354 -0.7236 7 6 3.7579 -2.4893 -1.8759 8 1 3.1361 -2.6199 -2.7492 9 6 4.8953 -3.2527 -1.7191 10 7 5.6523 -3.0940 -0.6554 11 14 5.3610 -4.5124 -3.0174 12 1 4.3520 -4.4967 -4.1068 13 1 6.6966 -4.1788 -3.5742 14 1 5.4043 -5.8637 -2.4029 15 6 3.1314 -2.1788 0.5295 16 16 2.1683 -0.9177 1.4501 17 1 -0.3633 0.5030 -0.8962 18 1 -0.3633 0.5247 0.8837 19 1 -0.3634 -1.0276 0.0125 20 1 1.6968 1.9575 0.8837 21 1 3.1521 1.4175 0.0126 22 1 1.7172 1.9500 -0.8961 23 1 1.3365 -1.5189 -1.5339 24 1 2.2513 -0.0791 -2.0421 25 1 6.4526 -3.6308 -0.5453 26 1 4.0729 -2.3935 1.0352 27 1 2.5474 -3.0889 0.3918 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887564.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:25 Heat of formation + Delta-G solvation = -42.454980 kcal Electronic energy + Delta-G solvation = -9852.644503 eV Core-core repulsion = 8120.881376 eV Total energy + Delta-G solvation = -1731.763127 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.24383 -35.29564 -32.65868 -28.21138 -27.44854 -26.99953 -22.51840 -20.80664 -18.43488 -17.20046 -16.36334 -15.93534 -15.15645 -14.55725 -14.42555 -14.16617 -13.62670 -13.09379 -12.95134 -12.87599 -12.69548 -12.28877 -12.20912 -11.84032 -11.66313 -11.22853 -11.08901 -10.69613 -10.40027 -8.58961 -8.17963 -6.32493 1.14192 1.39929 1.42846 1.54073 1.69467 2.40201 3.12226 3.86346 3.93730 4.20366 4.48519 4.56142 4.71140 4.79280 4.85706 4.92216 4.95685 5.04961 5.10322 5.22644 5.37736 5.44917 5.65859 5.80947 6.18215 6.76500 7.36842 8.88662 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.066249 B = 0.012224 C = 0.011435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.546873 B = 2289.975078 C = 2447.999004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.005 4.005 3 C -0.122 4.122 4 C -0.107 4.107 5 C 0.043 3.957 6 H 0.008 0.992 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.014 3.986 10 N -0.918 5.918 11 Si 0.961 3.039 12 H -0.263 1.263 13 H -0.280 1.280 14 H -0.281 1.281 15 C -0.016 4.016 16 S -0.381 6.381 17 H 0.085 0.915 18 H 0.066 0.934 19 H 0.054 0.946 20 H 0.067 0.933 21 H 0.043 0.957 22 H 0.085 0.915 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.264 0.736 26 H 0.076 0.924 27 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.498 5.038 -1.031 9.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.114 4.114 3 C -0.181 4.181 4 C -0.145 4.145 5 C 0.023 3.977 6 H 0.026 0.974 7 C -0.571 4.571 8 H 0.081 0.919 9 C -0.186 4.186 10 N -0.556 5.556 11 Si 0.786 3.214 12 H -0.187 1.187 13 H -0.206 1.206 14 H -0.207 1.207 15 C -0.164 4.164 16 S -0.154 6.154 17 H 0.104 0.896 18 H 0.085 0.915 19 H 0.073 0.927 20 H 0.086 0.914 21 H 0.062 0.938 22 H 0.104 0.896 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.509 5.140 0.261 9.104 hybrid contribution 0.968 -1.128 -1.429 2.061 sum -6.541 4.012 -1.167 7.762 Atomic orbital electron populations 1.21824 0.90338 1.02536 1.03079 1.23398 0.99093 0.97233 0.91704 1.21851 1.00616 0.92612 1.02999 1.22472 0.97252 0.98424 0.96368 1.19632 0.93005 0.93812 0.91243 0.97350 1.21421 1.08880 1.20518 1.06262 0.91943 1.25829 0.96076 0.99074 0.97586 1.70057 1.15390 1.41260 1.28936 0.85457 0.78184 0.78527 0.79234 1.18733 1.20592 1.20686 1.24197 0.98348 0.95764 0.98130 1.86949 1.66571 1.40427 1.21415 0.89584 0.91519 0.92672 0.91443 0.93788 0.89650 0.91866 0.90420 0.92727 0.90597 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 8.52 71.98 0.61 -2.64 15 2 C -0.01 -0.18 1.10 -10.36 -0.01 -0.19 15 3 C -0.12 -3.66 8.53 71.98 0.61 -3.04 15 4 C -0.11 -4.24 4.79 31.37 0.15 -4.09 15 5 C 0.04 2.15 2.49 -10.47 -0.03 2.12 15 6 H 0.01 0.46 8.14 -2.38 -0.02 0.44 15 7 C -0.53 -28.49 8.54 25.60 0.22 -28.27 15 8 H 0.06 3.25 7.76 -2.91 -0.02 3.22 15 9 C 0.01 0.77 5.32 84.66 0.45 1.22 15 10 N -0.92 -52.57 11.86 21.45 0.25 -52.32 15 11 Si 0.96 42.59 29.54 68.60 2.03 44.61 15 12 H -0.26 -11.19 7.11 99.48 0.71 -10.48 15 13 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 14 H -0.28 -12.29 7.11 99.48 0.71 -11.59 15 15 C -0.02 -0.80 6.12 72.71 0.44 -0.36 15 16 S -0.38 -16.06 22.13 -56.49 -1.25 -17.31 15 17 H 0.09 1.91 8.14 -2.39 -0.02 1.89 15 18 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 19 H 0.05 1.58 8.13 -2.38 -0.02 1.56 15 20 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 21 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 23 H 0.06 2.48 7.80 -2.39 -0.02 2.46 15 24 H 0.08 2.85 7.88 -2.38 -0.02 2.84 15 25 H 0.26 14.33 8.31 -92.71 -0.77 13.56 15 26 H 0.08 4.17 7.12 -2.39 -0.02 4.15 15 27 H 0.06 2.88 8.10 -2.38 -0.02 2.86 15 Total: -1.00 -58.46 234.21 4.60 -53.86 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.12 Total: 6.41 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 2.45 Total: -35.24 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.25 Total: -52.32 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -16.06 SS G_CDS: -1.25 Total: -17.31 kcal Total: -58.46 4.60 -53.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887564.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.401 kcal (2) G-P(sol) polarization free energy of solvation -58.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds