Wall clock time and date at job start Mon Mar 30 2020 01:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.33434 * 60.31645 * 9 7 2 11 11 C 1.52646 * 109.33994 * 180.02562 * 9 7 2 12 12 C 1.52940 * 110.33719 * 184.86194 * 11 9 7 13 13 S 1.81731 * 109.13938 * 293.77481 * 12 11 9 14 14 C 1.81933 * 102.08107 * 56.52895 * 13 12 11 15 15 C 1.50735 * 109.33782 * 300.79829 * 9 7 2 16 16 O 1.20762 * 120.43922 * 357.82921 * 15 9 7 17 17 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 18 18 H 1.09000 * 109.32684 * 305.12215 * 11 9 7 19 19 H 1.08989 * 109.32561 * 64.59485 * 11 9 7 20 20 H 1.08994 * 109.52945 * 53.67659 * 12 11 9 21 21 H 1.08998 * 109.52753 * 173.87947 * 12 11 9 22 22 H 1.09002 * 109.74405 * 70.90357 * 14 13 12 23 23 H 1.08996 * 109.75015 * 191.58415 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6299 -2.5573 -0.8933 11 6 2.2458 -3.6571 0.0018 12 6 1.5083 -4.9914 -0.1197 13 16 0.5141 -5.2612 1.3774 14 6 -0.5273 -3.7699 1.4168 15 6 0.3704 -2.5671 1.2219 16 8 0.3802 -1.6731 2.0338 17 1 -0.4850 -0.8401 -0.0004 18 1 2.9304 -3.5455 -0.8390 19 1 2.8148 -3.6427 0.9313 20 1 0.8549 -4.9685 -0.9917 21 1 2.2321 -5.7993 -0.2268 22 1 -1.2641 -3.8140 0.6147 23 1 -1.0343 -3.7001 2.3791 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259890954.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:14 Heat of formation + Delta-G solvation = -69.857673 kcal Electronic energy + Delta-G solvation = -9801.772630 eV Core-core repulsion = 7932.988139 eV Total energy + Delta-G solvation = -1868.784491 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.53318 -36.39447 -34.33752 -31.02568 -29.23082 -25.44195 -23.42653 -20.68124 -19.08041 -17.88890 -16.53490 -16.28228 -15.69405 -15.47696 -15.36696 -14.92267 -14.14323 -13.49821 -13.29954 -13.11804 -12.65460 -12.26134 -11.96128 -11.83626 -11.31333 -10.85192 -10.57044 -10.20818 -8.76589 -8.65466 -6.39136 0.45742 1.14156 1.49748 1.59230 1.66872 1.74838 2.54605 3.00484 3.38494 3.87988 3.95289 4.03923 4.22716 4.40239 4.64979 4.72642 4.77344 5.22023 5.30078 5.87901 6.12409 6.49666 6.85200 7.41966 8.73790 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.072385 B = 0.014094 C = 0.012673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.730181 B = 1986.221310 C = 2208.975954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.019 4.019 3 Si 1.113 2.887 4 H -0.287 1.287 5 H -0.262 1.262 6 H -0.281 1.281 7 C -0.610 4.610 8 H 0.053 0.947 9 C -0.026 4.026 10 H 0.040 0.960 11 C -0.088 4.088 12 C -0.077 4.077 13 S -0.243 6.243 14 C -0.137 4.137 15 C 0.344 3.656 16 O -0.471 6.471 17 H 0.252 0.748 18 H 0.086 0.914 19 H 0.056 0.944 20 H 0.099 0.901 21 H 0.138 0.862 22 H 0.123 0.877 23 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 -9.290 -1.574 9.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.219 4.219 3 Si 0.936 3.064 4 H -0.213 1.213 5 H -0.187 1.187 6 H -0.206 1.206 7 C -0.647 4.647 8 H 0.071 0.929 9 C -0.045 4.045 10 H 0.058 0.942 11 C -0.127 4.127 12 C -0.225 4.225 13 S -0.017 6.017 14 C -0.285 4.285 15 C 0.217 3.783 16 O -0.344 6.344 17 H 0.063 0.937 18 H 0.105 0.895 19 H 0.074 0.926 20 H 0.118 0.882 21 H 0.156 0.844 22 H 0.142 0.858 23 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.861 -8.082 -0.435 8.305 hybrid contribution -0.221 -0.544 -0.640 0.869 sum 1.640 -8.626 -1.075 8.846 Atomic orbital electron populations 1.70887 1.07980 1.29655 1.47429 1.27121 0.96494 1.06511 0.91804 0.82989 0.74692 0.71650 0.77097 1.21315 1.18650 1.20622 1.22087 0.94372 0.92078 1.56167 0.92896 1.19523 0.95246 0.96981 0.92795 0.94220 1.21494 0.97605 0.90758 1.02833 1.23659 1.01308 1.01171 0.96337 1.86552 1.48546 1.27024 1.39581 1.24242 1.00785 0.95197 1.08253 1.25886 0.80987 0.84064 0.87343 1.90300 1.61269 1.38662 1.44169 0.93730 0.89515 0.92560 0.88235 0.84427 0.85839 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.20 12.75 21.45 0.27 -56.93 14 2 C -0.02 -1.12 4.73 84.65 0.40 -0.72 14 3 Si 1.11 51.86 29.90 68.60 2.05 53.91 14 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 14 5 H -0.26 -10.96 7.11 99.48 0.71 -10.26 14 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 14 7 C -0.61 -34.04 8.17 25.60 0.21 -33.83 14 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 14 9 C -0.03 -1.26 1.88 -12.39 -0.02 -1.28 14 10 H 0.04 1.94 8.02 -2.39 -0.02 1.92 14 11 C -0.09 -3.21 4.93 30.46 0.15 -3.06 14 12 C -0.08 -2.14 6.39 71.96 0.46 -1.68 14 13 S -0.24 -7.60 22.34 -56.49 -1.26 -8.86 14 14 C -0.14 -4.97 6.73 71.44 0.48 -4.49 14 15 C 0.34 16.56 4.84 29.32 0.14 16.70 14 16 O -0.47 -27.16 15.16 -1.46 -0.02 -27.18 14 17 H 0.25 15.49 5.89 -92.71 -0.55 14.94 14 18 H 0.09 2.94 8.14 -2.39 -0.02 2.92 14 19 H 0.06 2.17 8.14 -2.39 -0.02 2.15 14 20 H 0.10 2.53 8.14 -2.39 -0.02 2.51 14 21 H 0.14 2.91 8.14 -2.39 -0.02 2.89 14 22 H 0.12 3.98 8.14 -2.39 -0.02 3.96 14 23 H 0.12 4.12 8.14 -2.39 -0.02 4.10 14 Total: -1.00 -68.31 209.64 4.28 -64.03 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.42 Total: 3.38 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 1.82 Total: -28.36 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.27 Total: -56.93 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.02 Total: -27.18 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.05 Total: 53.91 kcal Atomic # 16 Polarization: -7.60 SS G_CDS: -1.26 Total: -8.86 kcal Total: -68.31 4.28 -64.03 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259890954.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.824 kcal (2) G-P(sol) polarization free energy of solvation -68.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds