Wall clock time and date at job start Mon Mar 30 2020 01:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00080 * 2 1 4 4 H 1.48507 * 109.47003 * 239.99468 * 3 2 1 5 5 H 1.48497 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47233 * 119.99940 * 3 2 1 7 7 C 1.37883 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00163 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99754 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.34108 * 300.00069 * 9 7 2 11 11 C 1.52646 * 109.20849 * 180.39780 * 9 7 2 12 12 C 1.52934 * 110.34339 * 175.22285 * 11 9 7 13 13 S 1.81734 * 109.14245 * 66.21926 * 12 11 9 14 14 C 1.81923 * 102.07966 * 303.47556 * 13 12 11 15 15 C 1.50733 * 109.34186 * 59.68163 * 9 7 2 16 16 O 1.20765 * 120.43855 * 2.00801 * 15 9 7 17 17 H 0.97000 * 119.99675 * 0.02562 * 1 2 3 18 18 H 1.08997 * 109.32657 * 295.48672 * 11 9 7 19 19 H 1.09000 * 109.32932 * 54.95526 * 11 9 7 20 20 H 1.09006 * 109.52558 * 306.32447 * 12 11 9 21 21 H 1.08996 * 109.53273 * 186.12112 * 12 11 9 22 22 H 1.09001 * 109.75361 * 289.09497 * 14 13 12 23 23 H 1.09002 * 109.78983 * 168.38464 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6247 -2.5544 0.8910 11 6 2.2480 -3.6549 0.0112 12 6 1.5126 -4.9905 0.1308 13 16 0.5312 -5.2673 -1.3735 14 6 -0.5130 -3.7785 -1.4262 15 6 0.3800 -2.5727 -1.2275 16 8 0.3942 -1.6812 -2.0420 17 1 -0.4850 0.8401 -0.0004 18 1 2.8247 -3.6424 -0.9136 19 1 2.9255 -3.5392 0.8572 20 1 0.8518 -4.9662 0.9975 21 1 2.2372 -5.7964 0.2465 22 1 -1.2563 -3.8215 -0.6301 23 1 -1.0122 -3.7119 -2.3929 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259890976.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:16 Heat of formation + Delta-G solvation = -66.572585 kcal Electronic energy + Delta-G solvation = -9755.328599 eV Core-core repulsion = 7886.686560 eV Total energy + Delta-G solvation = -1868.642039 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.10020 -36.14761 -34.22748 -30.82965 -29.52702 -25.50025 -23.20995 -20.34383 -18.53377 -17.77499 -16.78236 -16.08244 -15.81814 -15.28963 -15.02584 -14.38995 -14.07065 -13.84337 -13.21653 -12.74788 -12.65608 -12.41867 -12.15801 -11.56775 -11.36144 -11.04918 -10.58191 -10.02125 -8.65124 -8.21330 -6.29740 0.62002 1.32927 1.37495 1.41699 1.47135 1.91779 2.40270 3.08350 3.53057 4.03542 4.09135 4.17617 4.40511 4.55498 4.86889 4.89539 4.93629 5.42139 5.49662 5.72763 6.12359 6.73479 7.16570 7.41366 8.89267 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.071985 B = 0.014013 C = 0.012600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.875682 B = 1997.735935 C = 2221.696131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.025 3.975 3 Si 0.955 3.045 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.539 4.539 8 H 0.061 0.939 9 C -0.009 4.009 10 H 0.044 0.956 11 C -0.095 4.095 12 C -0.075 4.075 13 S -0.252 6.252 14 C -0.134 4.134 15 C 0.362 3.638 16 O -0.471 6.471 17 H 0.260 0.740 18 H 0.056 0.944 19 H 0.087 0.913 20 H 0.098 0.902 21 H 0.135 0.865 22 H 0.118 0.882 23 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -8.757 1.625 9.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.577 4.577 8 H 0.079 0.921 9 C -0.028 4.028 10 H 0.062 0.938 11 C -0.134 4.134 12 C -0.222 4.222 13 S -0.026 6.026 14 C -0.282 4.282 15 C 0.234 3.766 16 O -0.344 6.344 17 H 0.068 0.932 18 H 0.075 0.925 19 H 0.105 0.895 20 H 0.116 0.884 21 H 0.153 0.847 22 H 0.136 0.864 23 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.410 -9.051 0.485 9.173 hybrid contribution -0.058 2.115 0.682 2.223 sum 1.352 -6.937 1.167 7.163 Atomic orbital electron populations 1.69962 1.07471 1.27517 1.50010 1.25687 0.95581 1.02729 0.93582 0.85657 0.78445 0.78978 0.78856 1.20444 1.21243 1.18448 1.21199 0.93175 0.91020 1.52267 0.92122 1.19320 0.94700 0.95545 0.93271 0.93796 1.21601 0.97862 0.91089 1.02816 1.23633 1.01294 1.01283 0.96038 1.86482 1.49203 1.27642 1.39308 1.24234 1.00876 0.95471 1.07662 1.25467 0.80565 0.83467 0.87057 1.90207 1.61208 1.38536 1.44468 0.93151 0.92540 0.89450 0.88378 0.84661 0.86423 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.28 11.69 21.45 0.25 -54.03 14 2 C 0.03 1.42 4.73 84.66 0.40 1.82 14 3 Si 0.96 45.10 29.54 68.60 2.03 47.13 14 4 H -0.28 -13.20 7.11 99.48 0.71 -12.49 14 5 H -0.29 -13.39 7.11 99.48 0.71 -12.69 14 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 14 7 C -0.54 -29.62 8.16 25.60 0.21 -29.41 14 8 H 0.06 3.23 7.73 -2.91 -0.02 3.21 14 9 C -0.01 -0.45 2.16 -12.39 -0.03 -0.48 14 10 H 0.04 2.18 8.14 -2.39 -0.02 2.16 14 11 C -0.09 -3.43 4.92 30.45 0.15 -3.28 14 12 C -0.07 -2.11 6.39 71.96 0.46 -1.65 14 13 S -0.25 -8.06 22.35 -56.49 -1.26 -9.32 14 14 C -0.13 -5.04 6.73 71.44 0.48 -4.56 14 15 C 0.36 17.66 5.69 29.32 0.17 17.83 14 16 O -0.47 -27.26 15.28 -1.47 -0.02 -27.29 14 17 H 0.26 14.97 8.31 -92.71 -0.77 14.19 14 18 H 0.06 2.14 8.14 -2.39 -0.02 2.13 14 19 H 0.09 2.90 8.14 -2.39 -0.02 2.88 14 20 H 0.10 2.55 8.14 -2.38 -0.02 2.53 14 21 H 0.14 2.90 8.14 -2.39 -0.02 2.89 14 22 H 0.12 4.03 8.14 -2.39 -0.02 4.01 14 23 H 0.11 4.10 8.14 -2.39 -0.02 4.08 14 Total: -1.00 -65.10 211.98 4.02 -61.07 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.19 Total: 2.16 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 1.84 Total: -19.73 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.25 Total: -54.03 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.02 Total: -27.29 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.26 Total: -9.32 kcal Total: -65.10 4.02 -61.07 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259890976.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.498 kcal (2) G-P(sol) polarization free energy of solvation -65.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds