Wall clock time and date at job start Mon Mar 30 2020 02:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00083 * 2 1 4 4 H 1.09002 * 109.54418 * 30.00038 * 3 2 1 5 5 C 1.53179 * 109.54190 * 269.82533 * 3 2 1 6 6 C 1.53096 * 109.16327 * 297.02068 * 5 3 2 7 7 O 1.42901 * 109.41556 * 302.39925 * 6 5 3 8 8 C 1.42898 * 114.10541 * 61.15467 * 7 6 5 9 9 C 1.53099 * 109.41306 * 298.84682 * 8 7 6 10 10 H 1.09001 * 109.51758 * 297.69932 * 9 8 7 11 11 C 1.50695 * 109.52289 * 177.51194 * 9 8 7 12 12 H 1.07998 * 120.00198 * 240.31031 * 11 9 8 13 13 C 1.37881 * 120.00039 * 60.31179 * 11 9 8 14 14 N 1.31513 * 120.00332 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99835 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47409 * 89.99996 * 15 13 11 17 17 H 1.48508 * 109.46912 * 209.99928 * 15 13 11 18 18 H 1.48495 * 109.47126 * 329.99594 * 15 13 11 19 19 H 1.09001 * 109.47331 * 299.99994 * 1 2 3 20 20 H 1.09001 * 109.47018 * 60.00142 * 1 2 3 21 21 H 1.09002 * 109.47332 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.52683 * 56.92815 * 5 3 2 23 23 H 1.09003 * 109.51723 * 177.12075 * 5 3 2 24 24 H 1.09007 * 109.47756 * 62.37485 * 6 5 3 25 25 H 1.08998 * 109.48111 * 182.40793 * 6 5 3 26 26 H 1.09007 * 109.47847 * 58.82232 * 8 7 6 27 27 H 1.09000 * 109.48718 * 178.86184 * 8 7 6 28 28 H 0.96996 * 120.00807 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3459 2.0004 0.5136 5 6 2.2227 1.7717 -1.4435 6 6 3.2180 0.8348 -2.1330 7 8 4.4439 0.8207 -1.3988 8 6 4.3148 0.3484 -0.0563 9 6 3.3635 1.2658 0.7166 10 1 3.7822 2.2712 0.7600 11 6 3.1776 0.7355 2.1148 12 1 2.1934 0.4544 2.4594 13 6 4.2640 0.6091 2.9543 14 7 5.4626 0.9509 2.5347 15 14 4.0337 -0.0490 4.6874 16 1 4.1819 -1.5265 4.6796 17 1 5.0576 0.5466 5.5831 18 1 2.6785 0.3100 5.1771 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.2725 1.7499 -1.9770 23 1 2.6184 2.7874 -1.4437 24 1 2.8040 -0.1730 -2.1684 25 1 3.4058 1.1867 -3.1474 26 1 3.9150 -0.6657 -0.0646 27 1 5.2926 0.3499 0.4253 28 1 6.2270 0.8617 3.1251 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259894659.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:39 Heat of formation + Delta-G solvation = -121.198721 kcal Electronic energy + Delta-G solvation = -12203.028075 eV Core-core repulsion = 10025.097492 eV Total energy + Delta-G solvation = -2177.930583 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.46603 -37.80702 -35.35753 -32.97220 -31.57653 -27.51255 -26.92723 -25.30393 -23.62579 -20.75932 -18.56646 -17.29999 -17.01009 -16.64531 -16.41787 -15.87834 -15.58048 -14.93856 -14.04953 -13.95236 -13.62879 -12.99947 -12.87388 -12.64455 -12.35479 -12.30306 -11.97106 -11.86719 -11.31804 -10.87756 -10.56989 -10.23437 -10.01432 -8.13208 -6.24520 1.41494 1.42602 1.52750 2.42281 3.03817 3.18702 3.34278 4.01618 4.13455 4.27905 4.51626 4.56466 4.59644 4.69612 4.76145 4.87131 4.92372 5.05552 5.11452 5.24403 5.49883 5.69855 5.86879 6.17570 6.53895 6.63782 6.85401 7.42162 8.93655 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.044177 B = 0.015673 C = 0.012462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.663717 B = 1786.027558 C = 2246.376308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.097 3.903 4 H 0.051 0.949 5 C -0.169 4.169 6 C 0.062 3.938 7 O -0.418 6.418 8 C 0.085 3.915 9 C 0.017 3.983 10 H 0.014 0.986 11 C -0.518 4.518 12 H 0.054 0.946 13 C 0.009 3.991 14 N -0.922 5.922 15 Si 0.960 3.040 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.268 1.268 19 H 0.034 0.966 20 H 0.053 0.947 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.109 0.891 26 H 0.019 0.981 27 H 0.087 0.913 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 -0.229 -5.696 9.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C 0.039 3.961 4 H 0.069 0.931 5 C -0.207 4.207 6 C -0.014 4.014 7 O -0.338 6.338 8 C 0.008 3.992 9 C -0.002 4.002 10 H 0.032 0.968 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.189 4.189 14 N -0.562 5.562 15 Si 0.785 3.215 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.192 1.192 19 H 0.053 0.947 20 H 0.072 0.928 21 H 0.112 0.888 22 H 0.112 0.888 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.038 0.962 27 H 0.105 0.895 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.568 -0.324 -5.709 9.485 hybrid contribution -0.255 -0.138 1.169 1.205 sum -7.823 -0.462 -4.540 9.056 Atomic orbital electron populations 1.22898 0.80884 1.03176 1.00093 1.87937 1.20264 1.28226 1.94979 1.22179 0.95205 0.84000 0.94701 0.93052 1.22643 1.01026 1.00294 0.96719 1.22558 0.84834 0.98595 0.95421 1.87787 1.32465 1.87125 1.26408 1.22543 1.01992 0.95137 0.79497 1.19323 0.91218 0.95416 0.94213 0.96772 1.21261 0.94032 1.42751 0.97555 0.92743 1.25809 0.94979 0.95590 1.02529 1.69976 0.99471 1.49128 1.37616 0.85527 0.77986 0.78445 0.79524 1.20244 1.20711 1.19228 0.94690 0.92803 0.88845 0.88835 0.90709 0.93731 0.87257 0.96221 0.89509 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.82 113.37 1.23 2.00 15 2 O -0.39 -16.29 8.78 -148.98 -1.31 -17.60 15 3 C 0.10 4.09 2.36 30.71 0.07 4.16 15 4 H 0.05 2.09 7.79 -2.39 -0.02 2.07 15 5 C -0.17 -5.82 5.83 30.69 0.18 -5.64 15 6 C 0.06 2.27 6.70 72.01 0.48 2.75 15 7 O -0.42 -19.64 10.76 -148.98 -1.60 -21.24 15 8 C 0.08 4.45 5.72 72.02 0.41 4.87 15 9 C 0.02 0.89 2.14 -11.45 -0.02 0.87 15 10 H 0.01 0.82 8.14 -2.39 -0.02 0.80 15 11 C -0.52 -29.17 8.19 25.60 0.21 -28.96 15 12 H 0.05 3.04 7.62 -2.91 -0.02 3.02 15 13 C 0.01 0.51 5.31 84.66 0.45 0.96 15 14 N -0.92 -54.25 11.37 21.45 0.24 -54.01 15 15 Si 0.96 44.28 29.54 68.60 2.03 46.30 15 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 19 H 0.03 1.03 8.09 -2.39 -0.02 1.01 15 20 H 0.05 1.32 7.84 -2.39 -0.02 1.30 15 21 H 0.09 2.40 8.14 -2.39 -0.02 2.38 15 22 H 0.09 2.54 7.84 -2.39 -0.02 2.52 15 23 H 0.07 2.53 8.14 -2.39 -0.02 2.52 15 24 H 0.04 1.62 7.82 -2.38 -0.02 1.61 15 25 H 0.11 3.16 8.14 -2.39 -0.02 3.14 15 26 H 0.02 1.05 7.82 -2.38 -0.02 1.03 15 27 H 0.09 5.08 6.17 -2.39 -0.01 5.07 15 28 H 0.26 14.70 8.31 -92.71 -0.77 13.93 15 Total: -1.00 -63.64 230.72 3.49 -60.16 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.12 Total: 5.40 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 3.01 Total: -19.01 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.24 Total: -54.01 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -2.91 Total: -38.84 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -63.64 3.49 -60.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259894659.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.044 kcal (2) G-P(sol) polarization free energy of solvation -63.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds