Wall clock time and date at job start Mon Mar 30 2020 02:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42909 * 114.00004 * 2 1 4 4 H 1.09005 * 109.61329 * 330.22404 * 3 2 1 5 5 C 1.53170 * 109.54377 * 90.43949 * 3 2 1 6 6 C 1.53095 * 109.16329 * 62.88875 * 5 3 2 7 7 O 1.42904 * 109.41172 * 57.60995 * 6 5 3 8 8 C 1.42909 * 114.09783 * 298.83888 * 7 6 5 9 9 C 1.53088 * 109.41245 * 61.16054 * 8 7 6 10 10 H 1.09006 * 109.52367 * 62.35939 * 9 8 7 11 11 C 1.50697 * 109.52479 * 182.48760 * 9 8 7 12 12 H 1.07991 * 120.00449 * 119.72333 * 11 9 8 13 13 C 1.37885 * 119.99686 * 300.00164 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 9 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00108 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99667 * 15 13 11 19 19 H 1.08993 * 109.47700 * 299.99845 * 1 2 3 20 20 H 1.09003 * 109.47417 * 60.00587 * 1 2 3 21 21 H 1.09007 * 109.46780 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.52744 * 302.98587 * 5 3 2 23 23 H 1.08998 * 109.52556 * 182.79380 * 5 3 2 24 24 H 1.08998 * 109.48116 * 297.62486 * 6 5 3 25 25 H 1.08999 * 109.49292 * 177.59390 * 6 5 3 26 26 H 1.08995 * 109.47837 * 301.18165 * 8 7 6 27 27 H 1.08997 * 109.47972 * 181.14379 * 8 7 6 28 28 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 2.0023 -0.5099 5 6 2.2287 1.7691 1.4434 6 6 3.2253 0.8296 2.1276 7 8 4.4484 0.8151 1.3888 8 6 4.3135 0.3452 0.0459 9 6 3.3607 1.2652 -0.7218 10 1 3.7812 2.2699 -0.7661 11 6 3.1687 0.7375 -2.1202 12 1 2.1828 0.4589 -2.4617 13 6 4.2528 0.6048 -2.9618 14 7 5.4535 0.9440 -2.5460 15 14 4.0159 -0.0565 -4.6927 16 1 2.5799 -0.3630 -4.9133 17 1 4.4622 0.9618 -5.6771 18 1 4.8178 -1.2947 -4.8634 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 1.2804 1.7478 1.9805 23 1 2.6258 2.7842 1.4439 24 1 2.8099 -0.1775 2.1630 25 1 3.4174 1.1794 3.1419 26 1 3.9124 -0.6682 0.0541 27 1 5.2895 0.3462 -0.4393 28 1 6.2160 0.8510 -3.1382 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259894662.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:40 Heat of formation + Delta-G solvation = -121.213065 kcal Electronic energy + Delta-G solvation = -12204.494815 eV Core-core repulsion = 10026.563610 eV Total energy + Delta-G solvation = -2177.931205 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.46556 -37.80539 -35.35921 -32.97294 -31.57504 -27.51309 -26.92737 -25.30449 -23.62592 -20.75954 -18.56856 -17.30143 -17.01106 -16.64463 -16.41707 -15.87391 -15.58125 -14.93975 -14.05420 -13.95487 -13.62908 -12.99848 -12.87852 -12.65283 -12.33217 -12.30297 -11.97232 -11.87488 -11.31278 -10.88248 -10.56394 -10.23343 -10.01610 -8.13446 -6.24611 1.40441 1.42261 1.54083 2.42198 3.03821 3.18689 3.34340 4.01630 4.13469 4.27960 4.51651 4.56502 4.59677 4.69618 4.76189 4.87063 4.92408 5.05572 5.11531 5.24442 5.50051 5.69928 5.86991 6.17594 6.53917 6.63831 6.85507 7.42107 8.93574 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.044167 B = 0.015688 C = 0.012472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.801155 B = 1784.423141 C = 2244.572788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.097 3.903 4 H 0.052 0.948 5 C -0.169 4.169 6 C 0.062 3.938 7 O -0.418 6.418 8 C 0.084 3.916 9 C 0.016 3.984 10 H 0.014 0.986 11 C -0.517 4.517 12 H 0.054 0.946 13 C 0.009 3.991 14 N -0.922 5.922 15 Si 0.960 3.040 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.280 1.280 19 H 0.054 0.946 20 H 0.034 0.966 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.109 0.891 26 H 0.020 0.980 27 H 0.087 0.913 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 -0.226 5.725 9.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.039 3.961 4 H 0.070 0.930 5 C -0.207 4.207 6 C -0.014 4.014 7 O -0.338 6.338 8 C 0.008 3.992 9 C -0.002 4.002 10 H 0.032 0.968 11 C -0.555 4.555 12 H 0.072 0.928 13 C -0.189 4.189 14 N -0.562 5.562 15 Si 0.785 3.215 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.206 1.206 19 H 0.072 0.928 20 H 0.053 0.947 21 H 0.111 0.889 22 H 0.112 0.888 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.038 0.962 27 H 0.105 0.895 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.550 -0.328 5.739 9.489 hybrid contribution -0.250 -0.132 -1.172 1.205 sum -7.800 -0.460 4.568 9.050 Atomic orbital electron populations 1.22894 0.80898 1.03167 1.00085 1.87940 1.20257 1.28222 1.94979 1.22180 0.95196 0.84009 0.94701 0.93017 1.22641 1.01013 1.00290 0.96723 1.22557 0.84901 0.98584 0.95370 1.87791 1.32528 1.87214 1.26256 1.22540 1.01986 0.95156 0.79497 1.19329 0.91251 0.95424 0.94219 0.96769 1.21293 0.93974 1.42707 0.97520 0.92752 1.25812 0.94974 0.95628 1.02530 1.69988 0.99484 1.49244 1.37489 0.85470 0.78287 0.78009 0.79684 1.19242 1.20396 1.20605 0.92789 0.94712 0.88864 0.88835 0.90704 0.93731 0.87264 0.96214 0.89491 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.83 113.37 1.23 2.00 15 2 O -0.39 -16.30 8.76 -148.98 -1.31 -17.61 15 3 C 0.10 4.08 2.37 30.71 0.07 4.16 15 4 H 0.05 2.10 7.79 -2.38 -0.02 2.09 15 5 C -0.17 -5.82 5.83 30.68 0.18 -5.64 15 6 C 0.06 2.27 6.69 72.01 0.48 2.75 15 7 O -0.42 -19.64 10.77 -148.98 -1.60 -21.24 15 8 C 0.08 4.45 5.72 72.01 0.41 4.86 15 9 C 0.02 0.86 2.14 -11.45 -0.02 0.84 15 10 H 0.01 0.82 8.14 -2.38 -0.02 0.80 15 11 C -0.52 -29.11 8.19 25.60 0.21 -28.90 15 12 H 0.05 3.04 7.62 -2.92 -0.02 3.02 15 13 C 0.01 0.49 5.30 84.66 0.45 0.94 15 14 N -0.92 -54.23 11.36 21.45 0.24 -53.99 15 15 Si 0.96 44.30 29.54 68.60 2.03 46.32 15 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 19 H 0.05 1.32 7.87 -2.39 -0.02 1.31 15 20 H 0.03 1.03 8.09 -2.39 -0.02 1.01 15 21 H 0.09 2.40 8.14 -2.38 -0.02 2.38 15 22 H 0.09 2.54 7.87 -2.38 -0.02 2.52 15 23 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 24 H 0.04 1.63 7.82 -2.39 -0.02 1.61 15 25 H 0.11 3.16 8.14 -2.39 -0.02 3.14 15 26 H 0.02 1.06 7.82 -2.39 -0.02 1.04 15 27 H 0.09 5.09 6.16 -2.39 -0.01 5.08 15 28 H 0.26 14.65 8.31 -92.71 -0.77 13.88 15 Total: -1.00 -63.69 230.73 3.49 -60.20 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 1.12 Total: 5.32 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 3.01 Total: -19.00 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.24 Total: -53.99 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -2.91 Total: -38.85 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -63.69 3.49 -60.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259894662.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.017 kcal (2) G-P(sol) polarization free energy of solvation -63.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds