Wall clock time and date at job start Mon Mar 30 2020 02:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99739 * 2 1 4 4 H 1.09001 * 109.54269 * 330.17168 * 3 2 1 5 5 C 1.53169 * 109.54278 * 90.44427 * 3 2 1 6 6 C 1.53101 * 109.16257 * 176.84242 * 5 3 2 7 7 O 1.42903 * 109.41341 * 302.39403 * 6 5 3 8 8 C 1.42900 * 114.09799 * 61.16062 * 7 6 5 9 9 C 1.53096 * 109.41227 * 298.83514 * 8 7 6 10 10 H 1.09002 * 109.52428 * 297.70720 * 9 8 7 11 11 C 1.50706 * 109.57269 * 177.54690 * 9 8 7 12 12 H 1.07998 * 120.00003 * 240.15496 * 11 9 8 13 13 C 1.37879 * 119.99691 * 60.16243 * 11 9 8 14 14 N 1.31514 * 120.00149 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99598 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47245 * 59.99861 * 15 13 11 17 17 H 1.48509 * 109.47085 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47186 * 299.99381 * 15 13 11 19 19 H 1.08995 * 109.47221 * 299.99982 * 1 2 3 20 20 H 1.09002 * 109.47357 * 60.00244 * 1 2 3 21 21 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.52819 * 296.74802 * 5 3 2 23 23 H 1.09005 * 109.52456 * 56.88123 * 5 3 2 24 24 H 1.09000 * 109.47517 * 62.37679 * 6 5 3 25 25 H 1.08997 * 109.47763 * 182.39886 * 6 5 3 26 26 H 1.09000 * 109.48323 * 178.85848 * 8 7 6 27 27 H 1.08998 * 109.48675 * 58.81697 * 8 7 6 28 28 H 0.97003 * 119.99561 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3444 2.0010 -0.5109 5 6 2.2288 1.7690 1.4434 6 6 2.9233 3.1334 1.4334 7 8 4.1577 3.0328 0.7204 8 6 4.0113 2.6490 -0.6483 9 6 3.3606 1.2651 -0.7218 10 1 4.0086 0.5319 -0.2415 11 6 3.1496 0.8825 -2.1641 12 1 2.1528 0.6853 -2.5302 13 6 4.2290 0.7840 -3.0163 14 7 5.4427 1.0245 -2.5706 15 14 3.9674 0.3091 -4.8038 16 1 3.0843 1.3082 -5.4573 17 1 5.2769 0.2739 -5.5034 18 1 3.3332 -1.0319 -4.8720 19 1 -0.3633 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.2667 1.8538 1.9485 23 1 2.8530 1.0455 1.9678 24 1 2.2798 3.8651 0.9448 25 1 3.1198 3.4488 2.4581 26 1 4.9918 2.6152 -1.1232 27 1 3.3821 3.3743 -1.1641 28 1 6.2021 0.9556 -3.1703 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259894666.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:41 Heat of formation + Delta-G solvation = -102.316946 kcal Electronic energy + Delta-G solvation = -12085.996237 eV Core-core repulsion = 9908.884430 eV Total energy + Delta-G solvation = -2177.111808 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.68649 -36.44706 -33.32947 -31.33569 -29.74586 -26.21904 -25.03082 -23.11345 -21.89650 -19.31267 -16.55131 -15.99777 -15.14912 -14.95884 -14.57914 -14.16617 -13.77164 -13.38087 -12.52961 -12.47337 -11.97087 -11.25208 -11.00385 -10.85416 -10.66115 -10.38082 -10.26268 -10.13541 -9.50332 -9.00979 -8.62289 -8.58887 -8.28557 -6.02751 -4.06559 3.32379 3.37014 3.39870 4.41953 4.55150 4.89520 5.30755 5.52147 5.63301 5.71138 5.78743 5.84451 6.02081 6.09530 6.15919 6.33239 6.57151 6.69649 6.79507 7.01485 7.57880 7.64374 7.90581 8.08880 8.23193 8.47916 8.95212 9.56641 11.05081 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.038446 B = 0.016072 C = 0.011978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.116084 B = 1741.758279 C = 2337.100800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.096 3.904 4 H 0.047 0.953 5 C -0.177 4.177 6 C 0.068 3.932 7 O -0.398 6.398 8 C 0.066 3.934 9 C 0.022 3.978 10 H 0.043 0.957 11 C -0.504 4.504 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.027 0.973 20 H 0.035 0.965 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.127 0.873 27 H 0.025 0.975 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 2.207 4.544 8.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C 0.039 3.961 4 H 0.065 0.935 5 C -0.215 4.215 6 C -0.009 4.009 7 O -0.318 6.318 8 C -0.010 4.010 9 C 0.004 3.996 10 H 0.062 0.938 11 C -0.542 4.542 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 H 0.046 0.954 20 H 0.053 0.947 21 H 0.093 0.907 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.144 0.856 27 H 0.043 0.957 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.178 2.076 4.551 7.949 hybrid contribution -0.710 -0.152 -1.083 1.304 sum -6.888 1.924 3.468 7.948 Atomic orbital electron populations 1.22644 0.83495 1.01458 0.98836 1.88003 1.17445 1.28669 1.94714 1.22405 0.97393 0.83334 0.92995 0.93525 1.22769 1.00314 0.98972 0.99482 1.22315 0.87244 0.94892 0.96497 1.87876 1.28417 1.89531 1.25926 1.23120 1.04458 0.94862 0.78542 1.19391 0.89721 0.94779 0.95746 0.93845 1.20954 0.93445 1.46308 0.93482 0.92449 1.24999 0.95139 0.95186 0.98877 1.69823 0.98296 1.49576 1.35638 0.86584 0.77255 0.79146 0.84602 1.20343 1.21223 1.20213 0.95414 0.94661 0.90699 0.92638 0.90849 0.94415 0.90268 0.85582 0.95658 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.83 101.05 1.09 1.64 15 2 O -0.37 -8.16 10.07 -35.23 -0.35 -8.52 15 3 C 0.10 2.12 2.05 -26.55 -0.05 2.07 15 4 H 0.05 1.00 7.79 -51.93 -0.40 0.60 15 5 C -0.18 -3.33 5.76 -26.59 -0.15 -3.48 15 6 C 0.07 1.25 6.84 37.21 0.25 1.50 15 7 O -0.40 -9.05 10.77 -35.23 -0.38 -9.43 15 8 C 0.07 1.63 5.87 37.21 0.22 1.85 15 9 C 0.02 0.58 2.02 -91.63 -0.19 0.40 15 10 H 0.04 1.27 8.14 -51.93 -0.42 0.85 15 11 C -0.50 -14.07 8.30 -34.44 -0.29 -14.36 15 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 13 C 0.06 1.64 5.31 -17.82 -0.09 1.55 15 14 N -0.89 -25.70 11.36 55.43 0.63 -25.07 15 15 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 15 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 19 H 0.03 0.40 7.99 -51.93 -0.42 -0.02 15 20 H 0.03 0.57 8.09 -51.93 -0.42 0.15 15 21 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.05 0.88 7.99 -51.93 -0.42 0.47 15 23 H 0.07 1.44 8.14 -51.93 -0.42 1.02 15 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 26 H 0.13 3.43 6.16 -51.93 -0.32 3.11 15 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 LS Contribution 232.96 15.07 3.51 3.51 Total: -1.00 -29.65 232.96 -4.87 -34.52 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -4.05 Total: -2.63 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 0.79 Total: -8.83 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.63 Total: -25.07 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.73 Total: -17.95 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.65 -4.87 -34.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259894666.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.792 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds