Wall clock time and date at job start Mon Mar 30 2020 02:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99739 * 2 1 4 4 H 1.09001 * 109.54269 * 330.17168 * 3 2 1 5 5 C 1.53169 * 109.54278 * 90.44427 * 3 2 1 6 6 C 1.53101 * 109.16257 * 176.84242 * 5 3 2 7 7 O 1.42903 * 109.41341 * 302.39403 * 6 5 3 8 8 C 1.42900 * 114.09799 * 61.16062 * 7 6 5 9 9 C 1.53096 * 109.41227 * 298.83514 * 8 7 6 10 10 H 1.09002 * 109.52428 * 297.70720 * 9 8 7 11 11 C 1.50706 * 109.57269 * 177.54690 * 9 8 7 12 12 H 1.07998 * 120.00003 * 240.15496 * 11 9 8 13 13 C 1.37879 * 119.99691 * 60.16243 * 11 9 8 14 14 N 1.31514 * 120.00149 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99598 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47245 * 59.99861 * 15 13 11 17 17 H 1.48509 * 109.47085 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47186 * 299.99381 * 15 13 11 19 19 H 1.08995 * 109.47221 * 299.99982 * 1 2 3 20 20 H 1.09002 * 109.47357 * 60.00244 * 1 2 3 21 21 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.52819 * 296.74802 * 5 3 2 23 23 H 1.09005 * 109.52456 * 56.88123 * 5 3 2 24 24 H 1.09000 * 109.47517 * 62.37679 * 6 5 3 25 25 H 1.08997 * 109.47763 * 182.39886 * 6 5 3 26 26 H 1.09000 * 109.48323 * 178.85848 * 8 7 6 27 27 H 1.08998 * 109.48675 * 58.81697 * 8 7 6 28 28 H 0.97003 * 119.99561 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3444 2.0010 -0.5109 5 6 2.2288 1.7690 1.4434 6 6 2.9233 3.1334 1.4334 7 8 4.1577 3.0328 0.7204 8 6 4.0113 2.6490 -0.6483 9 6 3.3606 1.2651 -0.7218 10 1 4.0086 0.5319 -0.2415 11 6 3.1496 0.8825 -2.1641 12 1 2.1528 0.6853 -2.5302 13 6 4.2290 0.7840 -3.0163 14 7 5.4427 1.0245 -2.5706 15 14 3.9674 0.3091 -4.8038 16 1 3.0843 1.3082 -5.4573 17 1 5.2769 0.2739 -5.5034 18 1 3.3332 -1.0319 -4.8720 19 1 -0.3633 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.2667 1.8538 1.9485 23 1 2.8530 1.0455 1.9678 24 1 2.2798 3.8651 0.9448 25 1 3.1198 3.4488 2.4581 26 1 4.9918 2.6152 -1.1232 27 1 3.3821 3.3743 -1.1641 28 1 6.2021 0.9556 -3.1703 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259894666.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:41 Heat of formation + Delta-G solvation = -123.018767 kcal Electronic energy + Delta-G solvation = -12086.893936 eV Core-core repulsion = 9908.884430 eV Total energy + Delta-G solvation = -2178.009506 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.39733 -38.08860 -35.36862 -33.02709 -31.61599 -27.65847 -27.02309 -24.79761 -23.67879 -21.08572 -18.59639 -17.65740 -16.95545 -16.70390 -16.24925 -15.84812 -15.44726 -14.99936 -14.26168 -14.17217 -13.74701 -12.89188 -12.80057 -12.59070 -12.45081 -12.29149 -11.98063 -11.84170 -11.29000 -10.93383 -10.59379 -10.28188 -10.19597 -8.14335 -6.26814 1.41296 1.43422 1.51396 2.41550 3.00838 3.09398 3.33436 4.00815 4.06561 4.23549 4.44828 4.49393 4.58253 4.59569 4.71117 4.83584 4.91422 4.96720 5.12074 5.17743 5.51944 5.62525 5.84564 6.16867 6.54835 6.56760 6.82624 7.40253 8.92302 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.038446 B = 0.016072 C = 0.011978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.116084 B = 1741.758279 C = 2337.100800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.099 3.901 4 H 0.053 0.947 5 C -0.169 4.169 6 C 0.060 3.940 7 O -0.415 6.415 8 C 0.080 3.920 9 C 0.018 3.982 10 H -0.004 1.004 11 C -0.523 4.523 12 H 0.053 0.947 13 C 0.010 3.990 14 N -0.921 5.921 15 Si 0.961 3.039 16 H -0.266 1.266 17 H -0.281 1.281 18 H -0.275 1.275 19 H 0.055 0.945 20 H 0.036 0.964 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.116 0.884 26 H 0.094 0.906 27 H 0.031 0.969 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 2.685 4.809 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.041 3.959 4 H 0.071 0.929 5 C -0.207 4.207 6 C -0.017 4.017 7 O -0.335 6.335 8 C 0.004 3.996 9 C -0.001 4.001 10 H 0.014 0.986 11 C -0.561 4.561 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.561 5.561 15 Si 0.786 3.214 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.200 1.200 19 H 0.073 0.927 20 H 0.055 0.945 21 H 0.112 0.888 22 H 0.112 0.888 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.134 0.866 26 H 0.112 0.888 27 H 0.049 0.951 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.844 2.561 4.831 9.562 hybrid contribution -0.242 -0.323 -1.097 1.169 sum -8.087 2.238 3.734 9.184 Atomic orbital electron populations 1.22910 0.80625 1.03298 1.00209 1.87941 1.20642 1.28744 1.95036 1.22238 0.95145 0.83787 0.94688 0.92902 1.22692 1.02093 0.98623 0.97287 1.22698 0.85846 0.95150 0.98008 1.87828 1.31356 1.89430 1.24863 1.22677 1.02572 0.94446 0.79902 1.19330 0.91610 0.94011 0.95120 0.98572 1.21241 0.93375 1.46703 0.94796 0.92837 1.25820 0.94833 0.95035 1.03144 1.69972 0.98999 1.50080 1.37034 0.85569 0.77447 0.78898 0.79514 1.19125 1.20675 1.20036 0.92691 0.94499 0.88782 0.88751 0.92302 0.92490 0.86599 0.88793 0.95061 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.83 113.37 1.23 2.02 15 2 O -0.40 -17.48 10.07 -148.98 -1.50 -18.98 15 3 C 0.10 4.27 2.05 30.71 0.06 4.33 15 4 H 0.05 2.18 7.79 -2.39 -0.02 2.16 15 5 C -0.17 -5.95 5.76 30.68 0.18 -5.77 15 6 C 0.06 2.01 6.84 72.02 0.49 2.50 15 7 O -0.42 -18.65 10.77 -148.98 -1.60 -20.26 15 8 C 0.08 4.05 5.87 72.01 0.42 4.48 15 9 C 0.02 0.97 2.02 -11.45 -0.02 0.94 15 10 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 15 11 C -0.52 -29.68 8.30 25.60 0.21 -29.47 15 12 H 0.05 2.99 7.74 -2.91 -0.02 2.97 15 13 C 0.01 0.57 5.31 84.66 0.45 1.02 15 14 N -0.92 -54.30 11.36 21.45 0.24 -54.06 15 15 Si 0.96 44.18 29.54 68.60 2.03 46.20 15 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 19 H 0.05 1.38 7.99 -2.39 -0.02 1.37 15 20 H 0.04 1.11 8.09 -2.39 -0.02 1.09 15 21 H 0.09 2.49 8.14 -2.38 -0.02 2.47 15 22 H 0.09 2.60 7.99 -2.39 -0.02 2.58 15 23 H 0.06 2.24 8.14 -2.38 -0.02 2.22 15 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 15 25 H 0.12 3.09 8.14 -2.39 -0.02 3.07 15 26 H 0.09 5.32 6.16 -2.39 -0.01 5.30 15 27 H 0.03 1.50 8.14 -2.39 -0.02 1.48 15 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 15 Total: -1.00 -64.85 232.96 3.31 -61.55 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.12 Total: 5.50 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 3.02 Total: -19.95 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.24 Total: -54.06 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -3.10 Total: -39.24 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -64.85 3.31 -61.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259894666.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.472 kcal (2) G-P(sol) polarization free energy of solvation -64.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds