Wall clock time and date at job start Mon Mar 30 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99856 * 2 1 4 4 H 1.09000 * 109.52085 * 29.88219 * 3 2 1 5 5 C 1.53090 * 109.57684 * 269.71898 * 3 2 1 6 6 O 1.42902 * 109.41244 * 182.45591 * 5 3 2 7 7 C 1.42899 * 114.09845 * 61.15908 * 6 5 3 8 8 C 1.53090 * 109.41602 * 298.83901 * 7 6 5 9 9 C 1.53178 * 109.16307 * 57.60933 * 8 7 6 10 10 H 1.09002 * 109.54325 * 62.88616 * 9 8 7 11 11 C 1.50704 * 109.61538 * 183.11017 * 9 8 7 12 12 H 1.07997 * 119.99634 * 119.77971 * 11 9 8 13 13 C 1.37874 * 119.99972 * 299.77117 * 11 9 8 14 14 N 1.31513 * 119.99832 * 180.02562 * 13 11 9 15 15 Si 1.86806 * 120.00112 * 0.02562 * 13 11 9 16 16 H 1.48496 * 109.47312 * 89.99271 * 15 13 11 17 17 H 1.48496 * 109.47074 * 209.99439 * 15 13 11 18 18 H 1.48497 * 109.46803 * 329.99165 * 15 13 11 19 19 H 1.09001 * 109.47546 * 299.99367 * 1 2 3 20 20 H 1.09002 * 109.47611 * 59.99885 * 1 2 3 21 21 H 1.08999 * 109.47375 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.48129 * 302.43601 * 5 3 2 23 23 H 1.08994 * 109.48055 * 62.46219 * 5 3 2 24 24 H 1.08998 * 109.48536 * 58.82688 * 7 6 5 25 25 H 1.09012 * 109.48094 * 178.84985 * 7 6 5 26 26 H 1.09003 * 109.52546 * 297.70233 * 8 7 6 27 27 H 1.09000 * 109.52544 * 177.52013 * 8 7 6 28 28 H 0.97006 * 119.99632 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3446 2.0005 0.5118 5 6 2.2253 1.7712 -1.4424 6 8 2.8587 3.0521 -1.4384 7 6 4.1462 3.0645 -0.8184 8 6 4.0083 2.6507 0.6491 9 6 3.3606 1.2645 0.7219 10 1 4.0095 0.5331 0.2402 11 6 3.1501 0.8795 2.1637 12 1 2.1536 0.6805 2.5294 13 6 4.2297 0.7813 3.0156 14 7 4.0460 0.4449 4.2736 15 14 5.9532 1.1261 2.3830 16 1 6.2645 2.5678 2.5551 17 1 6.9329 0.3134 3.1477 18 1 6.0322 0.7710 0.9433 19 1 -0.3634 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 2.8582 1.0543 -1.9653 23 1 1.2627 1.8431 -1.9485 24 1 4.8043 2.3645 -1.3331 25 1 4.5674 4.0683 -0.8751 26 1 3.3830 3.3729 1.1740 27 1 4.9944 2.6169 1.1122 28 1 4.8055 0.3761 4.8731 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918580.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:48 Heat of formation + Delta-G solvation = -116.045208 kcal Electronic energy + Delta-G solvation = -12151.142153 eV Core-core repulsion = 9973.435043 eV Total energy + Delta-G solvation = -2177.707110 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.60915 -38.10757 -35.72257 -33.48271 -31.28973 -28.21800 -27.40820 -24.31590 -23.91313 -21.16783 -18.97163 -17.95394 -17.24373 -16.89123 -16.12247 -15.83937 -15.77689 -15.00154 -14.79764 -14.42340 -13.74281 -13.09621 -12.91882 -12.84416 -12.44127 -12.22027 -11.87820 -11.65603 -11.29121 -11.15802 -10.87841 -10.70500 -9.97226 -8.29904 -6.33094 1.27248 1.34892 1.44788 2.31589 2.70168 3.01689 3.24789 3.88656 4.01848 4.18120 4.25382 4.30270 4.47527 4.51586 4.58200 4.69731 4.73885 4.83393 4.93176 5.10520 5.16163 5.50766 5.62932 6.08892 6.26901 6.49263 6.71688 7.29934 8.87443 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.037133 B = 0.018529 C = 0.013286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.861213 B = 1510.773722 C = 2106.988127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.076 3.924 4 H 0.050 0.950 5 C 0.047 3.953 6 O -0.386 6.386 7 C 0.059 3.941 8 C -0.154 4.154 9 C 0.009 3.991 10 H 0.027 0.973 11 C -0.506 4.506 12 H 0.028 0.972 13 C 0.006 3.994 14 N -0.952 5.952 15 Si 0.949 3.051 16 H -0.258 1.258 17 H -0.298 1.298 18 H -0.246 1.246 19 H 0.028 0.972 20 H 0.062 0.938 21 H 0.097 0.903 22 H 0.060 0.940 23 H 0.112 0.888 24 H 0.058 0.942 25 H 0.119 0.881 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 3.948 -11.973 12.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.018 3.982 4 H 0.068 0.932 5 C -0.030 4.030 6 O -0.305 6.305 7 C -0.018 4.018 8 C -0.192 4.192 9 C -0.010 4.010 10 H 0.045 0.955 11 C -0.544 4.544 12 H 0.046 0.954 13 C -0.190 4.190 14 N -0.593 5.593 15 Si 0.775 3.225 16 H -0.183 1.183 17 H -0.226 1.226 18 H -0.170 1.170 19 H 0.047 0.953 20 H 0.080 0.920 21 H 0.115 0.885 22 H 0.078 0.922 23 H 0.130 0.870 24 H 0.076 0.924 25 H 0.137 0.863 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.244 3.915 -11.900 12.589 hybrid contribution 0.482 -0.224 0.817 0.974 sum -0.762 3.692 -11.083 11.706 Atomic orbital electron populations 1.22933 0.80370 1.03505 1.00191 1.87908 1.20823 1.27917 1.95001 1.22659 0.95450 0.84222 0.95857 0.93233 1.23079 0.99131 0.85324 0.95461 1.87842 1.33051 1.30637 1.78936 1.22795 0.84590 1.03357 0.91019 1.22557 1.00501 0.98372 0.97782 1.19301 0.93373 0.93657 0.94664 0.95523 1.21131 0.93753 1.45444 0.94072 0.95412 1.25934 1.03703 0.94610 0.94742 1.70059 1.32603 1.50539 1.06059 0.85845 0.78687 0.78543 0.79462 1.18321 1.22559 1.16969 0.95303 0.91970 0.88496 0.92171 0.86957 0.92361 0.86266 0.91820 0.92594 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.82 113.37 1.23 2.05 15 2 O -0.40 -16.64 10.07 -148.98 -1.50 -18.14 15 3 C 0.08 3.14 2.16 30.68 0.07 3.21 15 4 H 0.05 2.11 7.79 -2.39 -0.02 2.09 15 5 C 0.05 1.54 6.47 72.01 0.47 2.00 15 6 O -0.39 -12.88 10.77 -148.98 -1.60 -14.48 15 7 C 0.06 1.88 6.84 72.01 0.49 2.38 15 8 C -0.15 -6.34 4.87 30.68 0.15 -6.19 15 9 C 0.01 0.43 1.49 -11.42 -0.02 0.41 15 10 H 0.03 1.31 7.20 -2.39 -0.02 1.29 15 11 C -0.51 -29.79 8.88 25.60 0.23 -29.56 15 12 H 0.03 1.83 7.99 -2.91 -0.02 1.81 15 13 C 0.01 0.38 5.45 84.65 0.46 0.84 15 14 N -0.95 -60.80 13.96 21.45 0.30 -60.50 15 15 Si 0.95 44.84 24.36 68.60 1.67 46.51 15 16 H -0.26 -11.26 6.90 99.48 0.69 -10.58 15 17 H -0.30 -14.11 7.11 99.48 0.71 -13.40 15 18 H -0.25 -10.72 6.53 99.48 0.65 -10.07 15 19 H 0.03 0.94 8.09 -2.39 -0.02 0.92 15 20 H 0.06 1.53 7.96 -2.39 -0.02 1.51 15 21 H 0.10 2.61 8.14 -2.39 -0.02 2.59 15 22 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.11 3.00 7.96 -2.39 -0.02 2.98 15 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15 25 H 0.12 3.07 8.14 -2.38 -0.02 3.05 15 26 H 0.06 2.68 8.14 -2.39 -0.02 2.66 15 27 H 0.06 2.33 3.41 -2.39 -0.01 2.32 15 28 H 0.27 15.81 8.31 -92.70 -0.77 15.04 15 Total: -1.00 -68.64 226.08 2.99 -65.65 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.05 Total: 5.84 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 3.07 Total: -24.86 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.30 Total: -60.50 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -3.10 Total: -32.63 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.67 Total: 46.51 kcal Total: -68.64 2.99 -65.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918580.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.400 kcal (2) G-P(sol) polarization free energy of solvation -68.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds