Wall clock time and date at job start Mon Mar 30 2020 02:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99645 * 2 1 4 4 H 1.08994 * 109.57815 * 29.84629 * 3 2 1 5 5 C 1.53095 * 109.52340 * 269.68294 * 3 2 1 6 6 O 1.42903 * 109.41663 * 297.70760 * 5 3 2 7 7 C 1.42902 * 114.09831 * 298.84195 * 6 5 3 8 8 C 1.53090 * 109.41539 * 61.15846 * 7 6 5 9 9 C 1.53176 * 109.16414 * 302.38944 * 8 7 6 10 10 H 1.09003 * 109.54431 * 297.03259 * 9 8 7 11 11 C 1.50696 * 109.54878 * 176.84847 * 9 8 7 12 12 H 1.07999 * 120.00319 * 240.00534 * 11 9 8 13 13 C 1.37885 * 119.99717 * 59.99917 * 11 9 8 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 H 1.08999 * 109.47650 * 59.99683 * 1 2 3 20 20 H 1.08996 * 109.47224 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46848 * 299.99583 * 1 2 3 22 22 H 1.09000 * 109.48030 * 177.72292 * 5 3 2 23 23 H 1.09000 * 109.48762 * 57.69582 * 5 3 2 24 24 H 1.08995 * 109.47917 * 301.17294 * 7 6 5 25 25 H 1.08997 * 109.48978 * 181.14629 * 7 6 5 26 26 H 1.09003 * 109.52339 * 182.49009 * 8 7 6 27 27 H 1.08999 * 109.52544 * 62.29776 * 8 7 6 28 28 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 2.0014 0.5111 5 6 2.2255 1.7696 -1.4429 6 8 3.1433 0.8884 -2.0935 7 6 4.4380 0.8452 -1.4902 8 6 4.3116 0.3439 -0.0493 9 6 3.3607 1.2645 0.7218 10 1 3.7820 2.2688 0.7669 11 6 3.1692 0.7349 2.1196 12 1 2.1825 0.4617 2.4632 13 6 4.2539 0.5991 2.9599 14 7 4.0870 0.1365 4.1797 15 14 5.9606 1.0722 2.3659 16 1 6.6118 -0.1070 1.7409 17 1 5.8515 2.1651 1.3664 18 1 6.7752 1.5347 3.5182 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.6312 2.7813 -1.4426 23 1 1.2737 1.7598 -1.9739 24 1 4.8726 1.8448 -1.4905 25 1 5.0801 0.1695 -2.0551 26 1 5.2922 0.3522 0.4267 27 1 3.9147 -0.6713 -0.0502 28 1 4.8501 0.0406 4.7707 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918583.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:49 Heat of formation + Delta-G solvation = -89.735136 kcal Electronic energy + Delta-G solvation = -12259.450533 eV Core-core repulsion = 10082.884314 eV Total energy + Delta-G solvation = -2176.566219 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.05307 -36.24356 -33.74752 -31.39344 -29.84552 -26.28321 -25.95140 -22.75942 -22.18275 -19.20969 -16.80262 -16.07914 -15.79598 -15.03647 -14.73595 -14.28847 -13.94504 -13.39474 -12.72471 -12.55283 -12.05327 -11.77641 -11.14451 -11.02299 -10.68279 -10.30673 -10.11656 -9.82166 -9.54651 -9.34849 -8.99721 -8.51316 -8.25326 -6.04033 -4.01512 3.27318 3.35056 3.38555 4.30589 4.41657 4.68860 5.26368 5.43856 5.55587 5.75678 5.78171 5.83059 5.93897 5.95390 6.04665 6.11737 6.17007 6.24057 6.73937 6.82599 6.92664 7.41273 7.67208 7.74859 8.08460 8.55958 9.02045 9.57379 11.09552 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.042032 B = 0.018200 C = 0.013750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.004376 B = 1538.080708 C = 2035.832519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.074 3.926 4 H 0.060 0.940 5 C 0.038 3.962 6 O -0.379 6.379 7 C 0.058 3.942 8 C -0.152 4.152 9 C 0.015 3.985 10 H 0.037 0.963 11 C -0.498 4.498 12 H 0.076 0.924 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.885 3.115 16 H -0.278 1.278 17 H -0.268 1.268 18 H -0.297 1.297 19 H 0.027 0.973 20 H 0.076 0.924 21 H 0.036 0.964 22 H 0.051 0.949 23 H 0.082 0.918 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 3.112 -9.478 10.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.016 3.984 4 H 0.078 0.922 5 C -0.039 4.039 6 O -0.298 6.298 7 C -0.019 4.019 8 C -0.190 4.190 9 C -0.004 4.004 10 H 0.054 0.946 11 C -0.536 4.536 12 H 0.094 0.906 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.716 3.284 16 H -0.205 1.205 17 H -0.193 1.193 18 H -0.225 1.225 19 H 0.045 0.955 20 H 0.094 0.906 21 H 0.055 0.945 22 H 0.069 0.931 23 H 0.100 0.900 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.159 2.789 -9.464 10.100 hybrid contribution 0.852 0.547 0.094 1.017 sum -1.308 3.336 -9.370 10.032 Atomic orbital electron populations 1.22675 0.83382 1.01735 0.98726 1.88060 1.17367 1.27193 1.94569 1.22720 0.97184 0.84940 0.93606 0.92192 1.23129 0.93245 0.92670 0.94845 1.87832 1.22459 1.65801 1.53697 1.22659 0.84330 0.99630 0.95261 1.22542 1.00078 1.02705 0.93634 1.19332 0.89842 0.95645 0.95548 0.94559 1.20878 0.96280 1.42452 0.93983 0.90559 1.25004 0.98776 0.94787 0.94794 1.69894 1.30953 1.46334 1.06851 0.86884 0.85004 0.79094 0.77455 1.20517 1.19309 1.22474 0.95460 0.90551 0.94522 0.93099 0.89952 0.94287 0.89987 0.92984 0.90342 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.82 101.05 1.09 1.63 15 2 O -0.35 -7.68 9.22 -42.72 -0.39 -8.07 15 3 C 0.07 1.53 2.38 -26.59 -0.06 1.46 15 4 H 0.06 1.18 7.79 -51.93 -0.40 0.77 15 5 C 0.04 0.68 6.49 37.21 0.24 0.92 15 6 O -0.38 -7.40 10.70 -42.72 -0.46 -7.86 15 7 C 0.06 1.09 6.84 37.20 0.25 1.35 15 8 C -0.15 -3.43 4.70 -26.59 -0.13 -3.56 15 9 C 0.02 0.36 1.61 -91.59 -0.15 0.21 15 10 H 0.04 0.86 7.21 -51.93 -0.37 0.49 15 11 C -0.50 -14.15 8.77 -34.44 -0.30 -14.46 15 12 H 0.08 2.37 7.87 -52.49 -0.41 1.96 15 13 C 0.07 1.96 5.45 -17.82 -0.10 1.86 15 14 N -0.90 -27.88 13.96 55.43 0.77 -27.10 15 15 Si 0.89 21.99 24.34 -169.99 -4.14 17.86 15 16 H -0.28 -6.77 6.90 56.52 0.39 -6.38 15 17 H -0.27 -6.28 6.54 56.52 0.37 -5.91 15 18 H -0.30 -7.39 7.11 56.52 0.40 -6.99 15 19 H 0.03 0.39 7.86 -51.93 -0.41 -0.02 15 20 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 21 H 0.04 0.60 8.09 -51.93 -0.42 0.18 15 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.08 1.26 7.86 -51.93 -0.41 0.85 15 24 H 0.04 0.69 8.14 -51.93 -0.42 0.26 15 25 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.05 1.20 3.37 -51.93 -0.18 1.03 15 27 H 0.08 1.89 7.83 -51.93 -0.41 1.49 15 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 LS Contribution 224.60 15.07 3.38 3.38 Total: -1.00 -31.45 224.60 -3.86 -35.31 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -3.88 Total: -2.93 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 0.85 Total: -10.58 kcal Atomic # 7 Polarization: -27.88 SS G_CDS: 0.77 Total: -27.10 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.85 Total: -15.93 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -31.45 -3.86 -35.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918583.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.428 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds