Wall clock time and date at job start Mon Mar 30 2020 02:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99645 * 2 1 4 4 H 1.08994 * 109.57815 * 29.84629 * 3 2 1 5 5 C 1.53095 * 109.52340 * 269.68294 * 3 2 1 6 6 O 1.42903 * 109.41663 * 297.70760 * 5 3 2 7 7 C 1.42902 * 114.09831 * 298.84195 * 6 5 3 8 8 C 1.53090 * 109.41539 * 61.15846 * 7 6 5 9 9 C 1.53176 * 109.16414 * 302.38944 * 8 7 6 10 10 H 1.09003 * 109.54431 * 297.03259 * 9 8 7 11 11 C 1.50696 * 109.54878 * 176.84847 * 9 8 7 12 12 H 1.07999 * 120.00319 * 240.00534 * 11 9 8 13 13 C 1.37885 * 119.99717 * 59.99917 * 11 9 8 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 H 1.08999 * 109.47650 * 59.99683 * 1 2 3 20 20 H 1.08996 * 109.47224 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46848 * 299.99583 * 1 2 3 22 22 H 1.09000 * 109.48030 * 177.72292 * 5 3 2 23 23 H 1.09000 * 109.48762 * 57.69582 * 5 3 2 24 24 H 1.08995 * 109.47917 * 301.17294 * 7 6 5 25 25 H 1.08997 * 109.48978 * 181.14629 * 7 6 5 26 26 H 1.09003 * 109.52339 * 182.49009 * 8 7 6 27 27 H 1.08999 * 109.52544 * 62.29776 * 8 7 6 28 28 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 2.0014 0.5111 5 6 2.2255 1.7696 -1.4429 6 8 3.1433 0.8884 -2.0935 7 6 4.4380 0.8452 -1.4902 8 6 4.3116 0.3439 -0.0493 9 6 3.3607 1.2645 0.7218 10 1 3.7820 2.2688 0.7669 11 6 3.1692 0.7349 2.1196 12 1 2.1825 0.4617 2.4632 13 6 4.2539 0.5991 2.9599 14 7 4.0870 0.1365 4.1797 15 14 5.9606 1.0722 2.3659 16 1 6.6118 -0.1070 1.7409 17 1 5.8515 2.1651 1.3664 18 1 6.7752 1.5347 3.5182 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.6312 2.7813 -1.4426 23 1 1.2737 1.7598 -1.9739 24 1 4.8726 1.8448 -1.4905 25 1 5.0801 0.1695 -2.0551 26 1 5.2922 0.3522 0.4267 27 1 3.9147 -0.6713 -0.0502 28 1 4.8501 0.0406 4.7707 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918583.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:49 Heat of formation + Delta-G solvation = -113.332412 kcal Electronic energy + Delta-G solvation = -12260.473788 eV Core-core repulsion = 10082.884314 eV Total energy + Delta-G solvation = -2177.589474 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.60519 -37.75665 -35.66735 -33.42467 -31.34394 -28.17942 -27.34420 -24.36557 -23.98041 -20.88283 -18.90071 -17.70781 -17.33843 -16.63672 -16.26576 -15.87307 -15.73278 -15.00377 -14.53253 -14.36968 -13.62024 -13.30447 -12.90545 -12.73664 -12.30977 -12.11861 -11.92076 -11.56615 -11.17317 -11.11890 -10.83783 -10.64373 -9.83066 -8.27622 -6.30066 1.30534 1.34440 1.45449 2.33060 2.88401 3.04775 3.28954 3.93921 4.07600 4.22682 4.29276 4.44933 4.52332 4.54122 4.60630 4.67738 4.74920 4.86243 4.95244 5.15831 5.18319 5.58299 5.69105 6.20247 6.33042 6.60582 6.75766 7.32620 8.89758 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.042032 B = 0.018200 C = 0.013750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.004376 B = 1538.080708 C = 2035.832519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.391 6.391 3 C 0.070 3.930 4 H 0.062 0.938 5 C 0.043 3.957 6 O -0.389 6.389 7 C 0.062 3.938 8 C -0.150 4.150 9 C 0.008 3.992 10 H 0.045 0.955 11 C -0.501 4.501 12 H 0.029 0.971 13 C 0.005 3.995 14 N -0.954 5.954 15 Si 0.950 3.050 16 H -0.269 1.269 17 H -0.238 1.238 18 H -0.298 1.298 19 H 0.058 0.942 20 H 0.088 0.912 21 H 0.031 0.969 22 H 0.075 0.925 23 H 0.110 0.890 24 H 0.061 0.939 25 H 0.107 0.893 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 4.329 -11.945 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.310 6.310 3 C 0.012 3.988 4 H 0.080 0.920 5 C -0.034 4.034 6 O -0.308 6.308 7 C -0.014 4.014 8 C -0.188 4.188 9 C -0.011 4.011 10 H 0.063 0.937 11 C -0.539 4.539 12 H 0.047 0.953 13 C -0.191 4.191 14 N -0.595 5.595 15 Si 0.776 3.224 16 H -0.196 1.196 17 H -0.162 1.162 18 H -0.226 1.226 19 H 0.077 0.923 20 H 0.106 0.894 21 H 0.049 0.951 22 H 0.093 0.907 23 H 0.127 0.873 24 H 0.080 0.920 25 H 0.125 0.875 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.386 4.017 -11.960 12.692 hybrid contribution 0.454 0.122 0.925 1.038 sum -0.932 4.140 -11.035 11.822 Atomic orbital electron populations 1.22870 0.81091 1.03022 0.99945 1.87989 1.20033 1.28075 1.94927 1.22741 0.95492 0.84867 0.95735 0.91969 1.23221 0.94477 0.93252 0.92471 1.87831 1.22840 1.66456 1.53638 1.22700 0.84782 1.01321 0.92633 1.22427 0.98930 1.01038 0.96421 1.19354 0.92666 0.95800 0.93295 0.93676 1.21144 0.94295 1.41777 0.96732 0.95253 1.25937 1.03568 0.94885 0.94745 1.70063 1.32364 1.48504 1.08551 0.85825 0.79127 0.79900 0.77524 1.19551 1.16168 1.22620 0.92317 0.89394 0.95072 0.90676 0.87251 0.92032 0.87522 0.93484 0.93018 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 10.82 113.37 1.23 2.10 15 2 O -0.39 -16.79 9.22 -141.82 -1.31 -18.10 15 3 C 0.07 2.78 2.38 30.69 0.07 2.85 15 4 H 0.06 2.38 7.79 -2.39 -0.02 2.36 15 5 C 0.04 1.34 6.49 72.01 0.47 1.81 15 6 O -0.39 -13.66 10.70 -141.82 -1.52 -15.18 15 7 C 0.06 2.10 6.84 72.01 0.49 2.59 15 8 C -0.15 -6.50 4.70 30.68 0.14 -6.36 15 9 C 0.01 0.35 1.61 -11.42 -0.02 0.33 15 10 H 0.05 2.02 7.21 -2.39 -0.02 2.00 15 11 C -0.50 -29.20 8.77 25.60 0.22 -28.98 15 12 H 0.03 1.92 7.87 -2.91 -0.02 1.90 15 13 C 0.00 0.27 5.45 84.66 0.46 0.73 15 14 N -0.95 -60.99 13.96 21.45 0.30 -60.70 15 15 Si 0.95 44.90 24.34 68.60 1.67 46.57 15 16 H -0.27 -12.26 6.90 99.48 0.69 -11.57 15 17 H -0.24 -10.04 6.54 99.48 0.65 -9.39 15 18 H -0.30 -14.07 7.11 99.48 0.71 -13.36 15 19 H 0.06 1.51 7.86 -2.39 -0.02 1.49 15 20 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 21 H 0.03 1.01 8.09 -2.39 -0.02 0.99 15 22 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 23 H 0.11 2.85 7.86 -2.39 -0.02 2.83 15 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.11 3.08 8.14 -2.39 -0.02 3.06 15 26 H 0.05 2.05 3.37 -2.39 -0.01 2.04 15 27 H 0.05 2.47 7.83 -2.39 -0.02 2.45 15 28 H 0.26 15.80 8.31 -92.71 -0.77 15.03 15 Total: -1.00 -69.37 224.60 3.27 -66.10 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.05 Total: 6.22 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 3.07 Total: -24.92 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.30 Total: -60.70 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -2.82 Total: -33.28 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.67 Total: 46.57 kcal Total: -69.37 3.27 -66.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918583.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.236 kcal (2) G-P(sol) polarization free energy of solvation -69.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds