Wall clock time and date at job start Mon Mar 30 2020 02:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99692 * 2 1 4 4 H 1.09000 * 109.52496 * 330.12163 * 3 2 1 5 5 C 1.53087 * 109.52619 * 90.31259 * 3 2 1 6 6 O 1.42905 * 109.41504 * 62.29860 * 5 3 2 7 7 C 1.42905 * 114.09831 * 61.15479 * 6 5 3 8 8 C 1.53090 * 109.41466 * 298.84306 * 7 6 5 9 9 C 1.53181 * 109.16481 * 57.61337 * 8 7 6 10 10 H 1.08997 * 109.54273 * 62.96755 * 9 8 7 11 11 C 1.50697 * 109.54569 * 183.15083 * 9 8 7 12 12 H 1.07994 * 120.00128 * 119.99459 * 11 9 8 13 13 C 1.37875 * 119.99603 * 299.99692 * 11 9 8 14 14 N 1.31516 * 120.00357 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99583 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47346 * 89.99916 * 15 13 11 17 17 H 1.48506 * 109.47158 * 209.99970 * 15 13 11 18 18 H 1.48501 * 109.47040 * 329.99570 * 15 13 11 19 19 H 1.08997 * 109.47480 * 60.00522 * 1 2 3 20 20 H 1.09001 * 109.46860 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47232 * 300.00175 * 1 2 3 22 22 H 1.08994 * 109.48330 * 302.31397 * 5 3 2 23 23 H 1.09001 * 109.48123 * 182.27792 * 5 3 2 24 24 H 1.08998 * 109.47767 * 58.82768 * 7 6 5 25 25 H 1.09005 * 109.47547 * 178.85011 * 7 6 5 26 26 H 1.09007 * 109.51738 * 177.51413 * 8 7 6 27 27 H 1.08996 * 109.52412 * 297.70387 * 8 7 6 28 28 H 0.96999 * 120.00189 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3445 2.0005 -0.5118 5 6 2.2255 1.7697 1.4428 6 8 3.1433 0.8885 2.0934 7 6 4.4380 0.8454 1.4901 8 6 4.3116 0.3440 0.0492 9 6 3.3606 1.2646 -0.7220 10 1 3.7820 2.2688 -0.7671 11 6 3.1692 0.7349 -2.1197 12 1 2.1825 0.4616 -2.4632 13 6 4.2539 0.5991 -2.9600 14 7 5.4554 0.9323 -2.5418 15 14 4.0165 -0.0568 -4.6929 16 1 3.7553 1.0743 -5.6189 17 1 5.2431 -0.7753 -5.1226 18 1 2.8624 -0.9911 -4.7147 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.2736 1.7598 1.9737 23 1 2.6311 2.7814 1.4424 24 1 4.8726 1.8450 1.4904 25 1 5.0800 0.1697 2.0553 26 1 5.2922 0.3523 -0.4267 27 1 3.9148 -0.6711 0.0502 28 1 6.2186 0.8364 -3.1329 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918584.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:50 Heat of formation + Delta-G solvation = -98.625693 kcal Electronic energy + Delta-G solvation = -12193.878484 eV Core-core repulsion = 10016.926742 eV Total energy + Delta-G solvation = -2176.951743 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.77967 -36.08733 -33.65563 -30.83593 -29.54709 -26.00120 -25.88107 -22.48472 -22.22994 -18.97778 -16.55100 -15.76794 -15.26355 -14.98136 -14.47870 -14.30498 -13.93909 -13.08752 -12.38360 -12.25254 -11.75378 -11.51304 -10.90876 -10.75488 -10.62815 -10.40863 -10.05733 -9.75120 -9.38400 -9.19122 -8.78945 -8.40255 -8.04221 -5.96410 -4.00410 3.32356 3.39134 3.43944 4.46520 4.50334 4.85969 5.34376 5.63085 5.73306 5.85159 5.91656 6.04730 6.11643 6.15948 6.27077 6.34304 6.46967 6.75149 7.13807 7.34900 7.54624 7.89039 7.95299 8.14075 8.20982 8.47863 9.00348 9.62514 11.09870 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.044412 B = 0.015556 C = 0.012388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.307016 B = 1799.480926 C = 2259.623576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.355 6.355 3 C 0.063 3.937 4 H 0.052 0.948 5 C 0.043 3.957 6 O -0.387 6.387 7 C 0.057 3.943 8 C -0.139 4.139 9 C 0.051 3.949 10 H 0.036 0.964 11 C -0.497 4.497 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.275 1.275 19 H 0.033 0.967 20 H 0.074 0.926 21 H 0.026 0.974 22 H 0.076 0.924 23 H 0.048 0.952 24 H 0.036 0.964 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 1.071 4.815 7.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.005 3.995 4 H 0.070 0.930 5 C -0.035 4.035 6 O -0.306 6.306 7 C -0.020 4.020 8 C -0.177 4.177 9 C 0.032 3.968 10 H 0.054 0.946 11 C -0.535 4.535 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.535 5.535 15 Si 0.721 3.279 16 H -0.209 1.209 17 H -0.213 1.213 18 H -0.199 1.199 19 H 0.052 0.948 20 H 0.092 0.908 21 H 0.045 0.955 22 H 0.094 0.906 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.858 0.796 4.909 6.953 hybrid contribution -0.234 0.057 -1.213 1.236 sum -5.092 0.853 3.697 6.350 Atomic orbital electron populations 1.22659 0.83895 1.01455 0.98594 1.88069 1.16900 1.27746 1.94598 1.23014 0.98224 0.84258 0.94040 0.93011 1.23021 0.92997 0.92692 0.94769 1.87792 1.22978 1.65725 1.54099 1.22774 0.83430 0.99394 0.96355 1.22147 1.03976 0.99827 0.91738 1.18838 0.87862 0.96211 0.93852 0.94598 1.21038 0.93891 1.42242 0.96334 0.92501 1.24951 0.95257 0.95570 0.98412 1.69863 0.98653 1.48990 1.35980 0.86584 0.77593 0.79007 0.84757 1.20860 1.21278 1.19947 0.94837 0.90766 0.95517 0.90611 0.93368 0.94565 0.90669 0.88514 0.92847 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.82 101.05 1.09 1.63 15 2 O -0.36 -7.92 9.22 -42.72 -0.39 -8.32 15 3 C 0.06 1.36 2.38 -26.59 -0.06 1.30 15 4 H 0.05 1.06 7.79 -51.93 -0.40 0.66 15 5 C 0.04 0.82 6.49 37.20 0.24 1.06 15 6 O -0.39 -8.22 10.70 -42.72 -0.46 -8.68 15 7 C 0.06 1.19 6.84 37.20 0.25 1.44 15 8 C -0.14 -3.42 4.99 -26.59 -0.13 -3.55 15 9 C 0.05 1.28 2.03 -91.58 -0.19 1.10 15 10 H 0.04 0.96 8.14 -51.93 -0.42 0.54 15 11 C -0.50 -13.84 8.19 -34.44 -0.28 -14.13 15 12 H 0.06 1.60 7.63 -52.49 -0.40 1.20 15 13 C 0.06 1.63 5.30 -17.82 -0.09 1.54 15 14 N -0.90 -25.57 11.36 55.43 0.63 -24.94 15 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 15 16 H -0.28 -6.74 7.11 56.52 0.40 -6.33 15 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 19 H 0.03 0.54 8.09 -51.93 -0.42 0.12 15 20 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 21 H 0.03 0.39 7.86 -51.93 -0.41 -0.01 15 22 H 0.08 1.27 7.86 -51.93 -0.41 0.86 15 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.08 1.42 8.14 -51.93 -0.42 0.99 15 26 H 0.10 2.57 6.18 -51.92 -0.32 2.25 15 27 H 0.05 1.40 7.83 -51.93 -0.41 0.99 15 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 LS Contribution 231.44 15.07 3.49 3.49 Total: -1.00 -29.82 231.44 -4.94 -34.76 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -4.02 Total: -3.30 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 0.83 Total: -9.61 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.63 Total: -24.94 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.85 Total: -16.99 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.82 -4.94 -34.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918584.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.867 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds