Wall clock time and date at job start Mon Mar 30 2020 02:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99692 * 2 1 4 4 H 1.09000 * 109.52496 * 330.12163 * 3 2 1 5 5 C 1.53087 * 109.52619 * 90.31259 * 3 2 1 6 6 O 1.42905 * 109.41504 * 62.29860 * 5 3 2 7 7 C 1.42905 * 114.09831 * 61.15479 * 6 5 3 8 8 C 1.53090 * 109.41466 * 298.84306 * 7 6 5 9 9 C 1.53181 * 109.16481 * 57.61337 * 8 7 6 10 10 H 1.08997 * 109.54273 * 62.96755 * 9 8 7 11 11 C 1.50697 * 109.54569 * 183.15083 * 9 8 7 12 12 H 1.07994 * 120.00128 * 119.99459 * 11 9 8 13 13 C 1.37875 * 119.99603 * 299.99692 * 11 9 8 14 14 N 1.31516 * 120.00357 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99583 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47346 * 89.99916 * 15 13 11 17 17 H 1.48506 * 109.47158 * 209.99970 * 15 13 11 18 18 H 1.48501 * 109.47040 * 329.99570 * 15 13 11 19 19 H 1.08997 * 109.47480 * 60.00522 * 1 2 3 20 20 H 1.09001 * 109.46860 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47232 * 300.00175 * 1 2 3 22 22 H 1.08994 * 109.48330 * 302.31397 * 5 3 2 23 23 H 1.09001 * 109.48123 * 182.27792 * 5 3 2 24 24 H 1.08998 * 109.47767 * 58.82768 * 7 6 5 25 25 H 1.09005 * 109.47547 * 178.85011 * 7 6 5 26 26 H 1.09007 * 109.51738 * 177.51413 * 8 7 6 27 27 H 1.08996 * 109.52412 * 297.70387 * 8 7 6 28 28 H 0.96999 * 120.00189 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3445 2.0005 -0.5118 5 6 2.2255 1.7697 1.4428 6 8 3.1433 0.8885 2.0934 7 6 4.4380 0.8454 1.4901 8 6 4.3116 0.3440 0.0492 9 6 3.3606 1.2646 -0.7220 10 1 3.7820 2.2688 -0.7671 11 6 3.1692 0.7349 -2.1197 12 1 2.1825 0.4616 -2.4632 13 6 4.2539 0.5991 -2.9600 14 7 5.4554 0.9323 -2.5418 15 14 4.0165 -0.0568 -4.6929 16 1 3.7553 1.0743 -5.6189 17 1 5.2431 -0.7753 -5.1226 18 1 2.8624 -0.9911 -4.7147 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.2736 1.7598 1.9737 23 1 2.6311 2.7814 1.4424 24 1 4.8726 1.8450 1.4904 25 1 5.0800 0.1697 2.0553 26 1 5.2922 0.3523 -0.4267 27 1 3.9148 -0.6711 0.0502 28 1 6.2186 0.8364 -3.1329 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918584.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:50 Heat of formation + Delta-G solvation = -118.733522 kcal Electronic energy + Delta-G solvation = -12194.750425 eV Core-core repulsion = 10016.926742 eV Total energy + Delta-G solvation = -2177.823684 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.45716 -37.69456 -35.63982 -32.80993 -31.20085 -27.96187 -27.29194 -24.35335 -23.96722 -20.76456 -18.56469 -17.40015 -17.07788 -16.71033 -16.13639 -16.01799 -15.60577 -14.65856 -14.29969 -14.04239 -13.46649 -13.12081 -12.79980 -12.62153 -12.43962 -12.05676 -12.01813 -11.57617 -11.18806 -10.93486 -10.65650 -10.47568 -9.77495 -8.07876 -6.19185 1.39657 1.41502 1.51538 2.43794 2.94700 3.17322 3.34797 4.05532 4.19804 4.39783 4.49009 4.52516 4.61981 4.65736 4.72377 4.74913 4.88670 4.98040 5.16751 5.45285 5.56241 5.85330 5.97381 6.32470 6.37807 6.68345 6.87016 7.46466 8.96561 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.044412 B = 0.015556 C = 0.012388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.307016 B = 1799.480926 C = 2259.623576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.390 6.390 3 C 0.065 3.935 4 H 0.060 0.940 5 C 0.043 3.957 6 O -0.394 6.394 7 C 0.064 3.936 8 C -0.130 4.130 9 C 0.042 3.958 10 H 0.016 0.984 11 C -0.515 4.515 12 H 0.047 0.953 13 C 0.011 3.989 14 N -0.918 5.918 15 Si 0.952 3.048 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 H 0.036 0.964 20 H 0.090 0.910 21 H 0.052 0.948 22 H 0.107 0.893 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.072 1.222 5.277 8.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.309 6.309 3 C 0.007 3.993 4 H 0.078 0.922 5 C -0.034 4.034 6 O -0.313 6.313 7 C -0.012 4.012 8 C -0.168 4.168 9 C 0.023 3.977 10 H 0.034 0.966 11 C -0.553 4.553 12 H 0.066 0.934 13 C -0.187 4.187 14 N -0.559 5.559 15 Si 0.778 3.222 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.199 1.199 19 H 0.055 0.945 20 H 0.108 0.892 21 H 0.071 0.929 22 H 0.125 0.875 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.831 0.954 5.376 7.989 hybrid contribution 0.015 0.004 -1.364 1.365 sum -5.816 0.958 4.012 7.130 Atomic orbital electron populations 1.22896 0.81215 1.03051 0.99986 1.88000 1.19918 1.28033 1.94920 1.22872 0.96340 0.84590 0.95479 0.92203 1.23164 0.94129 0.92903 0.93198 1.87783 1.23077 1.66414 1.54062 1.22685 0.84109 1.00330 0.94056 1.21942 1.02110 0.98498 0.94258 1.18818 0.90412 0.94863 0.93569 0.96609 1.21319 0.93539 1.42478 0.98005 0.93450 1.25686 0.95080 0.95894 1.02045 1.69979 0.99155 1.49611 1.37105 0.85642 0.77444 0.78543 0.80522 1.19916 1.20871 1.19908 0.94519 0.89199 0.92928 0.87470 0.91778 0.93480 0.88545 0.91089 0.95289 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 10.82 113.37 1.23 2.02 15 2 O -0.39 -16.93 9.22 -141.82 -1.31 -18.24 15 3 C 0.07 2.76 2.38 30.69 0.07 2.83 15 4 H 0.06 2.38 7.79 -2.39 -0.02 2.36 15 5 C 0.04 1.53 6.49 72.01 0.47 2.00 15 6 O -0.39 -15.85 10.70 -141.82 -1.52 -17.37 15 7 C 0.06 2.62 6.84 72.01 0.49 3.11 15 8 C -0.13 -6.45 4.99 30.68 0.15 -6.30 15 9 C 0.04 2.13 2.03 -11.42 -0.02 2.11 15 10 H 0.02 0.86 8.14 -2.39 -0.02 0.84 15 11 C -0.52 -29.05 8.19 25.60 0.21 -28.84 15 12 H 0.05 2.69 7.63 -2.91 -0.02 2.66 15 13 C 0.01 0.62 5.30 84.65 0.45 1.06 15 14 N -0.92 -53.16 11.36 21.45 0.24 -52.91 15 15 Si 0.95 44.52 29.54 68.60 2.03 46.54 15 16 H -0.27 -12.32 7.11 99.48 0.71 -11.62 15 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 18 H -0.27 -12.68 7.11 99.48 0.71 -11.98 15 19 H 0.04 1.12 8.09 -2.39 -0.02 1.10 15 20 H 0.09 2.52 8.14 -2.39 -0.02 2.50 15 21 H 0.05 1.38 7.86 -2.39 -0.02 1.36 15 22 H 0.11 3.16 7.86 -2.39 -0.02 3.14 15 23 H 0.06 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.10 3.47 8.14 -2.38 -0.02 3.45 15 26 H 0.07 3.87 6.18 -2.38 -0.01 3.85 15 27 H 0.03 1.53 7.83 -2.39 -0.02 1.51 15 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 15 Total: -1.00 -63.22 231.44 3.62 -59.60 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 1.12 Total: 4.38 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 3.05 Total: -22.01 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.24 Total: -52.91 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -2.82 Total: -35.60 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -63.22 3.62 -59.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918584.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.131 kcal (2) G-P(sol) polarization free energy of solvation -63.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds