Wall clock time and date at job start Mon Mar 30 2020 02:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99703 * 2 1 4 4 H 1.08999 * 109.57898 * 330.15897 * 3 2 1 5 5 C 1.53091 * 109.52048 * 90.32011 * 3 2 1 6 6 O 1.42906 * 109.41418 * 177.51510 * 5 3 2 7 7 C 1.42907 * 114.09489 * 298.83608 * 6 5 3 8 8 C 1.53091 * 109.41544 * 61.15924 * 7 6 5 9 9 C 1.53179 * 109.51820 * 209.99921 * 3 2 1 10 10 H 1.08999 * 109.62147 * 303.02400 * 9 3 2 11 11 C 1.50696 * 109.54620 * 63.25047 * 9 3 2 12 12 H 1.08003 * 119.99707 * 5.23252 * 11 9 3 13 13 C 1.37872 * 120.00356 * 185.23249 * 11 9 3 14 14 N 1.31521 * 120.00237 * 198.19572 * 13 11 9 15 15 Si 1.86805 * 119.99978 * 18.19419 * 13 11 9 16 16 H 1.48501 * 109.47239 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.47088 * 60.00068 * 15 13 11 18 18 H 1.48502 * 109.47162 * 299.99997 * 15 13 11 19 19 H 1.09004 * 109.46997 * 59.99566 * 1 2 3 20 20 H 1.08994 * 109.47505 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47119 * 300.00051 * 1 2 3 22 22 H 1.08995 * 109.48432 * 57.52826 * 5 3 2 23 23 H 1.09002 * 109.48077 * 297.49051 * 5 3 2 24 24 H 1.09007 * 109.47669 * 301.17794 * 7 6 5 25 25 H 1.09002 * 109.49288 * 181.14964 * 7 6 5 26 26 H 1.09003 * 109.52220 * 182.48798 * 8 7 6 27 27 H 1.09002 * 109.52094 * 62.29874 * 8 7 6 28 28 H 0.97004 * 119.99817 * 354.61916 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0015 -0.5110 5 6 2.2256 1.7696 1.4429 6 8 2.8596 3.0502 1.4403 7 6 4.1471 3.0626 0.8203 8 6 4.0090 2.6504 -0.6476 9 6 3.3606 1.2645 -0.7219 10 1 4.0099 0.5321 -0.2423 11 6 3.1498 0.8833 -2.1645 12 1 2.1481 0.7719 -2.5527 13 6 4.2355 0.6768 -2.9888 14 7 4.0833 0.6998 -4.2949 15 14 5.9227 0.3645 -2.2504 16 1 6.9127 0.1741 -3.3408 17 1 5.8755 -0.8567 -1.4067 18 1 6.3212 1.5270 -1.4167 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 2.8581 1.0518 1.9650 23 1 1.2629 1.8417 1.9491 24 1 4.8048 2.3616 1.3344 25 1 4.5690 4.0660 0.8780 26 1 4.9952 2.6164 -1.1107 27 1 3.3841 3.3735 -1.1717 28 1 3.1963 0.7839 -4.6785 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918586.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:52 Heat of formation + Delta-G solvation = -100.033627 kcal Electronic energy + Delta-G solvation = -12137.554005 eV Core-core repulsion = 9960.541210 eV Total energy + Delta-G solvation = -2177.012795 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.01069 -36.60114 -33.78273 -31.38181 -29.75320 -26.14115 -25.94131 -22.46869 -21.95252 -19.30677 -17.56309 -16.23907 -15.78221 -15.09023 -14.56291 -14.43994 -13.68806 -13.46020 -12.94115 -12.27981 -12.01718 -11.65304 -11.35899 -10.91993 -10.65661 -10.30280 -10.14342 -9.87142 -9.59544 -9.39453 -8.82737 -8.54722 -8.11314 -6.40852 -4.00031 3.35585 3.45779 3.61946 4.15354 4.50953 4.64729 5.29316 5.43968 5.52421 5.68119 5.74177 5.85123 5.86806 5.90077 6.01813 6.03258 6.26714 6.33648 6.68019 6.83217 7.05860 7.30546 7.58197 7.98930 8.14637 8.42584 8.94802 9.66149 10.98429 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.036064 B = 0.018018 C = 0.013652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.209591 B = 1553.599650 C = 2050.530774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.075 3.925 4 H 0.058 0.942 5 C 0.040 3.960 6 O -0.386 6.386 7 C 0.054 3.946 8 C -0.157 4.157 9 C 0.022 3.978 10 H 0.028 0.972 11 C -0.583 4.583 12 H 0.055 0.945 13 C 0.028 3.972 14 N -0.909 5.909 15 Si 1.046 2.954 16 H -0.286 1.286 17 H -0.283 1.283 18 H -0.275 1.275 19 H 0.037 0.963 20 H 0.077 0.923 21 H 0.030 0.970 22 H 0.051 0.949 23 H 0.080 0.920 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 1.990 9.785 10.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C 0.017 3.983 4 H 0.076 0.924 5 C -0.038 4.038 6 O -0.305 6.305 7 C -0.023 4.023 8 C -0.195 4.195 9 C 0.003 3.997 10 H 0.046 0.954 11 C -0.621 4.621 12 H 0.073 0.927 13 C -0.177 4.177 14 N -0.544 5.544 15 Si 0.875 3.125 16 H -0.212 1.212 17 H -0.210 1.210 18 H -0.202 1.202 19 H 0.056 0.944 20 H 0.096 0.904 21 H 0.048 0.952 22 H 0.070 0.930 23 H 0.098 0.902 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.595 1.753 9.455 9.634 hybrid contribution -1.835 0.160 0.222 1.855 sum -2.430 1.912 9.677 10.159 Atomic orbital electron populations 1.22685 0.82950 1.01717 0.99089 1.87970 1.17934 1.27925 1.94701 1.22776 0.97651 0.83964 0.93909 0.92395 1.23083 0.97288 0.85501 0.97885 1.87821 1.32946 1.30362 1.79413 1.22768 0.84138 1.00969 0.94413 1.22753 1.02567 0.99946 0.94189 1.19129 0.90668 0.92466 0.97487 0.95381 1.21812 0.95038 1.51562 0.93716 0.92667 1.25749 1.03794 0.93384 0.94731 1.70863 1.25633 1.46704 1.11159 0.84030 0.75771 0.77195 0.75466 1.21214 1.20951 1.20207 0.94439 0.90437 0.95184 0.93028 0.90180 0.93837 0.89754 0.90569 0.91709 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.82 101.05 1.09 1.64 15 2 O -0.37 -7.92 10.07 -35.23 -0.35 -8.27 15 3 C 0.08 1.62 2.16 -26.59 -0.06 1.56 15 4 H 0.06 1.28 7.79 -51.93 -0.40 0.87 15 5 C 0.04 0.73 6.47 37.20 0.24 0.97 15 6 O -0.39 -7.35 10.77 -35.23 -0.38 -7.73 15 7 C 0.05 0.98 6.84 37.20 0.25 1.23 15 8 C -0.16 -3.41 5.10 -26.59 -0.14 -3.54 15 9 C 0.02 0.53 1.49 -91.59 -0.14 0.39 15 10 H 0.03 0.70 6.80 -51.93 -0.35 0.35 15 11 C -0.58 -16.67 8.56 -34.44 -0.29 -16.97 15 12 H 0.06 1.71 7.99 -52.48 -0.42 1.30 15 13 C 0.03 0.81 5.34 -17.82 -0.10 0.71 15 14 N -0.91 -28.19 13.70 55.43 0.76 -27.43 15 15 Si 1.05 25.40 26.43 -169.99 -4.49 20.91 15 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 18 H -0.28 -6.02 5.56 56.52 0.31 -5.71 15 19 H 0.04 0.63 8.09 -51.93 -0.42 0.21 15 20 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 21 H 0.03 0.42 7.96 -51.92 -0.41 0.01 15 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.08 1.28 7.96 -51.93 -0.41 0.86 15 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 26 H 0.08 1.69 4.87 -51.93 -0.25 1.44 15 27 H 0.06 1.45 8.14 -51.93 -0.42 1.02 15 28 H 0.27 8.25 8.73 -40.82 -0.36 7.89 15 LS Contribution 228.42 15.07 3.44 3.44 Total: -1.00 -31.11 228.42 -4.19 -35.30 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.03 Total: -2.20 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 0.87 Total: -14.02 kcal Atomic # 7 Polarization: -28.19 SS G_CDS: 0.76 Total: -27.43 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.73 Total: -16.00 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -4.49 Total: 20.91 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.11 -4.19 -35.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918586.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.736 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds