Wall clock time and date at job start Mon Mar 30 2020 02:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99703 * 2 1 4 4 H 1.08999 * 109.57898 * 330.15897 * 3 2 1 5 5 C 1.53091 * 109.52048 * 90.32011 * 3 2 1 6 6 O 1.42906 * 109.41418 * 177.51510 * 5 3 2 7 7 C 1.42907 * 114.09489 * 298.83608 * 6 5 3 8 8 C 1.53091 * 109.41544 * 61.15924 * 7 6 5 9 9 C 1.53179 * 109.51820 * 209.99921 * 3 2 1 10 10 H 1.08999 * 109.62147 * 303.02400 * 9 3 2 11 11 C 1.50696 * 109.54620 * 63.25047 * 9 3 2 12 12 H 1.08003 * 119.99707 * 5.23252 * 11 9 3 13 13 C 1.37872 * 120.00356 * 185.23249 * 11 9 3 14 14 N 1.31521 * 120.00237 * 198.19572 * 13 11 9 15 15 Si 1.86805 * 119.99978 * 18.19419 * 13 11 9 16 16 H 1.48501 * 109.47239 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.47088 * 60.00068 * 15 13 11 18 18 H 1.48502 * 109.47162 * 299.99997 * 15 13 11 19 19 H 1.09004 * 109.46997 * 59.99566 * 1 2 3 20 20 H 1.08994 * 109.47505 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47119 * 300.00051 * 1 2 3 22 22 H 1.08995 * 109.48432 * 57.52826 * 5 3 2 23 23 H 1.09002 * 109.48077 * 297.49051 * 5 3 2 24 24 H 1.09007 * 109.47669 * 301.17794 * 7 6 5 25 25 H 1.09002 * 109.49288 * 181.14964 * 7 6 5 26 26 H 1.09003 * 109.52220 * 182.48798 * 8 7 6 27 27 H 1.09002 * 109.52094 * 62.29874 * 8 7 6 28 28 H 0.97004 * 119.99817 * 354.61916 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0015 -0.5110 5 6 2.2256 1.7696 1.4429 6 8 2.8596 3.0502 1.4403 7 6 4.1471 3.0626 0.8203 8 6 4.0090 2.6504 -0.6476 9 6 3.3606 1.2645 -0.7219 10 1 4.0099 0.5321 -0.2423 11 6 3.1498 0.8833 -2.1645 12 1 2.1481 0.7719 -2.5527 13 6 4.2355 0.6768 -2.9888 14 7 4.0833 0.6998 -4.2949 15 14 5.9227 0.3645 -2.2504 16 1 6.9127 0.1741 -3.3408 17 1 5.8755 -0.8567 -1.4067 18 1 6.3212 1.5270 -1.4167 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 2.8581 1.0518 1.9650 23 1 1.2629 1.8417 1.9491 24 1 4.8048 2.3616 1.3344 25 1 4.5690 4.0660 0.8780 26 1 4.9952 2.6164 -1.1107 27 1 3.3841 3.3735 -1.1717 28 1 3.1963 0.7839 -4.6785 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918586.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:51 Heat of formation + Delta-G solvation = -123.316841 kcal Electronic energy + Delta-G solvation = -12138.563641 eV Core-core repulsion = 9960.541210 eV Total energy + Delta-G solvation = -2178.022431 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.58999 -38.13503 -35.74986 -33.40111 -31.27099 -27.92293 -27.45843 -24.12649 -23.73925 -21.06436 -19.74083 -17.83190 -17.28574 -16.66241 -16.11697 -16.03090 -15.52063 -15.02762 -14.61024 -14.05802 -13.76736 -13.48084 -12.92885 -12.58098 -12.36969 -12.08930 -11.81826 -11.66004 -11.24534 -11.08725 -10.78539 -10.47901 -10.03128 -8.72588 -6.33609 1.42444 1.53830 1.72330 2.48751 2.69572 3.03516 3.23938 3.87791 4.00823 4.22538 4.30819 4.33767 4.45059 4.48891 4.54601 4.71030 4.75852 4.76345 4.94852 5.13026 5.27811 5.52551 5.99420 6.04988 6.10321 6.46075 6.56343 7.42064 8.64287 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.036064 B = 0.018018 C = 0.013652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.209591 B = 1553.599650 C = 2050.530774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.075 3.925 4 H 0.040 0.960 5 C 0.048 3.952 6 O -0.390 6.390 7 C 0.057 3.943 8 C -0.154 4.154 9 C 0.013 3.987 10 H 0.029 0.971 11 C -0.587 4.587 12 H 0.009 0.991 13 C -0.025 4.025 14 N -0.941 5.941 15 Si 1.084 2.916 16 H -0.290 1.290 17 H -0.270 1.270 18 H -0.232 1.232 19 H 0.024 0.976 20 H 0.098 0.902 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.109 0.891 24 H 0.062 0.938 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 2.458 12.514 12.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C 0.017 3.983 4 H 0.058 0.942 5 C -0.029 4.029 6 O -0.309 6.309 7 C -0.019 4.019 8 C -0.192 4.192 9 C -0.006 4.006 10 H 0.047 0.953 11 C -0.624 4.624 12 H 0.028 0.972 13 C -0.222 4.222 14 N -0.578 5.578 15 Si 0.905 3.095 16 H -0.216 1.216 17 H -0.196 1.196 18 H -0.156 1.156 19 H 0.043 0.957 20 H 0.117 0.883 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.126 0.874 24 H 0.081 0.919 25 H 0.134 0.866 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.297 2.239 12.207 12.414 hybrid contribution -2.277 -0.027 -0.684 2.378 sum -1.980 2.212 11.523 11.899 Atomic orbital electron populations 1.22920 0.80531 1.03499 0.99994 1.87901 1.20671 1.28018 1.95004 1.22696 0.95778 0.83888 0.95961 0.94212 1.23063 0.99044 0.85467 0.95350 1.87835 1.33372 1.30641 1.79054 1.22846 0.84320 1.03346 0.91372 1.22620 1.01580 0.97729 0.97239 1.19179 0.92856 0.93892 0.94641 0.95288 1.22014 0.92924 1.50919 0.96581 0.97218 1.27285 1.08134 0.92494 0.94296 1.71006 1.24501 1.49645 1.12617 0.83606 0.71148 0.79226 0.75548 1.21589 1.19556 1.15583 0.95711 0.88329 0.92014 0.91869 0.87351 0.91928 0.86554 0.90878 0.93391 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.82 113.37 1.23 2.08 15 2 O -0.40 -16.81 10.07 -148.98 -1.50 -18.31 15 3 C 0.07 3.15 2.16 30.68 0.07 3.22 15 4 H 0.04 1.77 7.79 -2.39 -0.02 1.75 15 5 C 0.05 1.59 6.47 72.01 0.47 2.06 15 6 O -0.39 -13.33 10.77 -148.98 -1.60 -14.93 15 7 C 0.06 1.85 6.84 72.01 0.49 2.34 15 8 C -0.15 -6.38 5.10 30.69 0.16 -6.22 15 9 C 0.01 0.64 1.49 -11.42 -0.02 0.62 15 10 H 0.03 1.39 6.80 -2.39 -0.02 1.37 15 11 C -0.59 -34.44 8.56 25.60 0.22 -34.22 15 12 H 0.01 0.62 7.99 -2.91 -0.02 0.60 15 13 C -0.03 -1.50 5.34 84.65 0.45 -1.05 15 14 N -0.94 -60.39 13.70 21.45 0.29 -60.10 15 15 Si 1.08 50.10 26.43 68.60 1.81 51.92 15 16 H -0.29 -13.52 7.11 99.48 0.71 -12.81 15 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 15 18 H -0.23 -9.06 5.56 99.48 0.55 -8.51 15 19 H 0.02 0.83 8.09 -2.39 -0.02 0.81 15 20 H 0.10 2.67 8.14 -2.39 -0.02 2.66 15 21 H 0.06 1.57 7.96 -2.38 -0.02 1.55 15 22 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.11 3.00 7.96 -2.39 -0.02 2.98 15 24 H 0.06 1.83 8.14 -2.38 -0.02 1.81 15 25 H 0.12 3.05 8.14 -2.39 -0.02 3.03 15 26 H 0.07 3.04 4.87 -2.39 -0.01 3.03 15 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 15 28 H 0.25 16.27 8.73 -92.71 -0.81 15.46 15 Total: -1.00 -68.96 228.42 3.00 -65.96 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 0.93 Total: 6.63 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 3.06 Total: -31.17 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.29 Total: -60.10 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -3.10 Total: -33.24 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 1.81 Total: 51.92 kcal Total: -68.96 3.00 -65.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918586.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.358 kcal (2) G-P(sol) polarization free energy of solvation -68.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds