Wall clock time and date at job start Mon Mar 30 2020 01:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36895 * 120.00204 * 2 1 4 4 H 1.08002 * 120.00266 * 202.39304 * 3 2 1 5 5 C 1.38808 * 120.00098 * 22.39652 * 3 2 1 6 6 N 1.31557 * 120.00093 * 11.04174 * 5 3 2 7 7 Si 1.86804 * 120.00004 * 191.04478 * 5 3 2 8 8 H 1.48501 * 109.47284 * 59.99734 * 7 5 3 9 9 H 1.48498 * 109.47005 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47106 * 299.99647 * 7 5 3 11 11 C 1.38192 * 119.99618 * 180.02562 * 2 1 3 12 12 N 1.31860 * 127.92708 * 359.97438 * 11 2 1 13 13 N 1.26405 * 117.45565 * 179.97438 * 12 11 2 14 14 N 1.28560 * 119.32162 * 359.97438 * 13 12 11 15 15 S 1.70145 * 105.27811 * 0.02562 * 14 13 12 16 16 H 1.09005 * 109.46653 * 274.54567 * 1 2 3 17 17 H 1.08998 * 109.46970 * 34.54020 * 1 2 3 18 18 H 1.08995 * 109.47568 * 154.54035 * 1 2 3 19 19 H 0.96997 * 120.00147 * 180.02562 * 6 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1855 0.0000 4 1 3.1685 1.2208 -0.3563 5 6 1.5341 2.3423 0.4580 6 7 0.3825 2.2688 1.0899 7 14 2.3410 4.0036 0.1772 8 1 2.5016 4.2357 -1.2808 9 1 1.4885 5.0722 0.7572 10 1 3.6740 4.0233 0.8314 11 6 2.1559 -1.1968 -0.0005 12 7 1.6603 -2.4187 -0.0006 13 7 2.4807 -3.3804 -0.0017 14 7 3.7421 -3.1319 -0.0031 15 16 3.8647 -1.4349 -0.0023 16 1 -0.3633 0.0815 1.0245 17 1 -0.3633 0.8465 -0.5827 18 1 -0.3634 -0.9278 -0.4417 19 1 -0.0477 3.0772 1.4096 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259945273.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:42 Heat of formation + Delta-G solvation = 69.505838 kcal Electronic energy + Delta-G solvation = -9283.105438 eV Core-core repulsion = 7349.116609 eV Total energy + Delta-G solvation = -1933.988828 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.027 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.39026 -38.97463 -34.69217 -32.35865 -29.11267 -28.21557 -25.32407 -21.54955 -20.71891 -19.26434 -18.28610 -16.85505 -16.53772 -15.74163 -15.10947 -14.38508 -13.75057 -13.63578 -13.00454 -12.92518 -12.72763 -12.18757 -12.13004 -11.66035 -11.20119 -10.68963 -10.67934 -9.47523 -8.90361 -6.35954 -0.32752 0.36361 1.14193 1.41453 1.44123 1.56264 1.77231 2.01539 2.47347 2.61603 3.95743 4.41039 4.64855 4.70028 4.89041 5.00007 5.29567 5.95057 6.46065 6.71834 8.02712 8.17179 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.068370 B = 0.014017 C = 0.011901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.435612 B = 1997.142115 C = 2352.244849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.300 5.300 3 C -0.315 4.315 4 H 0.123 0.877 5 C 0.018 3.982 6 N -0.830 5.830 7 Si 1.018 2.982 8 H -0.254 1.254 9 H -0.262 1.262 10 H -0.259 1.259 11 C 0.158 3.842 12 N -0.421 5.421 13 N -0.008 5.008 14 N -0.376 5.376 15 S 0.068 5.932 16 H 0.075 0.925 17 H 0.088 0.912 18 H 0.064 0.936 19 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 7.463 -1.335 7.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N 0.014 4.986 3 C -0.453 4.453 4 H 0.141 0.859 5 C -0.196 4.196 6 N -0.459 5.459 7 Si 0.836 3.164 8 H -0.178 1.178 9 H -0.186 1.186 10 H -0.183 1.183 11 C -0.210 4.210 12 N -0.305 5.305 13 N -0.003 5.003 14 N -0.369 5.369 15 S 0.189 5.811 16 H 0.093 0.907 17 H 0.106 0.894 18 H 0.083 0.917 19 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.157 6.732 -1.221 6.844 hybrid contribution -0.515 0.939 0.036 1.072 sum -0.358 7.671 -1.185 7.770 Atomic orbital electron populations 1.22004 0.76050 1.01672 1.03627 1.42725 1.07228 1.00260 1.48412 1.20819 1.01125 0.82924 1.40395 0.85908 1.26746 0.96358 1.04323 0.92177 1.70091 1.15411 1.33961 1.26458 0.84595 0.78622 0.73029 0.80164 1.17799 1.18635 1.18265 1.26223 0.93935 0.90642 1.10174 1.71918 1.28574 0.94327 1.35689 1.74639 0.95850 1.24289 1.05535 1.82430 1.11228 1.01116 1.42097 1.84411 1.07176 1.10548 1.79013 0.90687 0.89365 0.91730 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.52 8.87 127.77 1.13 5.66 13 2 N -0.30 -13.81 3.10 -544.98 -1.69 -15.50 13 3 C -0.32 -13.74 9.36 84.04 0.79 -12.96 13 4 H 0.12 5.19 7.25 -2.91 -0.02 5.17 13 5 C 0.02 0.72 5.14 84.87 0.44 1.16 13 6 N -0.83 -33.65 10.57 21.65 0.23 -33.43 13 7 Si 1.02 30.20 29.57 68.60 2.03 32.23 13 8 H -0.25 -7.32 7.11 99.48 0.71 -6.62 13 9 H -0.26 -7.37 7.11 99.48 0.71 -6.66 13 10 H -0.26 -7.69 7.11 99.48 0.71 -6.99 13 11 C 0.16 7.79 7.96 178.83 1.42 9.22 13 12 N -0.42 -21.64 11.12 -57.86 -0.64 -22.29 13 13 N -0.01 -0.42 12.76 37.02 0.47 0.06 13 14 N -0.38 -19.04 13.44 37.02 0.50 -18.54 13 15 S 0.07 3.19 22.95 -56.49 -1.30 1.90 13 16 H 0.07 3.17 7.40 -2.38 -0.02 3.15 13 17 H 0.09 3.42 7.20 -2.39 -0.02 3.40 13 18 H 0.06 2.56 7.63 -2.39 -0.02 2.54 13 19 H 0.30 11.04 8.31 -92.71 -0.77 10.27 13 Total: -1.00 -52.88 193.94 4.65 -48.23 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: 1.28 Total: 4.27 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 3.78 Total: 3.07 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -1.14 Total: -89.70 kcal Atomic # 14 Polarization: 30.20 SS G_CDS: 2.03 Total: 32.23 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.30 Total: 1.90 kcal Total: -52.88 4.65 -48.23 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259945273.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.731 kcal (2) G-P(sol) polarization free energy of solvation -52.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds