Wall clock time and date at job start Mon Mar 30 2020 01:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.53240 * 109.62052 * 299.35843 * 9 7 2 11 11 N 1.46418 * 109.13572 * 184.99229 * 10 9 7 12 12 C 1.34133 * 121.43208 * 28.72445 * 11 10 9 13 13 S 1.71197 * 118.69629 * 179.59914 * 12 11 10 14 14 N 1.34135 * 122.60674 * 359.57963 * 12 11 10 15 15 C 1.46380 * 121.34233 * 0.60969 * 14 12 11 16 16 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 17 17 H 1.08992 * 109.61647 * 59.72431 * 9 7 2 18 18 H 1.09006 * 109.52566 * 304.69762 * 10 9 7 19 19 H 1.08998 * 109.52464 * 64.89111 * 10 9 7 20 20 H 0.96998 * 119.23660 * 208.87636 * 11 10 9 21 21 H 0.97003 * 119.33153 * 180.59221 * 14 12 11 22 22 H 1.08997 * 109.52473 * 211.01475 * 15 14 12 23 23 H 1.09003 * 109.57348 * 90.85505 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 0.3813 -2.5913 1.2578 11 7 -0.2529 -3.9101 1.3075 12 6 0.3256 -4.9858 0.7532 13 16 -0.4730 -6.4962 0.8615 14 7 1.5049 -4.9250 0.1169 15 6 2.2436 -3.6665 0.0012 16 1 -0.4851 0.8401 0.0004 17 1 0.6194 -2.5571 -0.8869 18 1 1.0044 -2.4562 2.1420 19 1 -0.3846 -1.8163 1.2289 20 1 -1.1110 -4.0067 1.7492 21 1 1.8759 -5.7313 -0.2743 22 1 2.8127 -3.6623 -0.9284 23 1 2.9250 -3.5641 0.8459 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259982482.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:06 Heat of formation + Delta-G solvation = -2.209519 kcal Electronic energy + Delta-G solvation = -9614.530190 eV Core-core repulsion = 7780.971894 eV Total energy + Delta-G solvation = -1833.558296 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.37944 -34.05175 -33.80540 -30.97969 -25.84598 -25.08467 -22.93651 -19.29524 -18.58275 -16.80218 -16.17246 -15.25273 -14.66105 -14.60984 -13.66667 -13.13067 -12.91922 -12.32282 -11.20823 -11.10496 -10.81835 -10.52968 -10.30216 -9.93902 -9.54148 -8.85574 -8.53292 -7.27104 -7.23217 -6.45169 -4.54838 2.06313 2.45826 3.07929 3.16671 3.17875 3.59310 3.92863 4.11465 4.88807 5.51386 5.73280 6.04049 6.15221 6.27006 6.34797 6.96818 7.14423 7.22146 7.53502 7.57463 7.82384 7.87809 8.49109 9.14392 10.62330 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.097443 B = 0.010576 C = 0.009831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.278780 B = 2646.888910 C = 2847.455847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.523 4.523 8 H 0.067 0.933 9 C 0.024 3.976 10 C 0.085 3.915 11 N -0.664 5.664 12 C 0.598 3.402 13 S -0.744 6.744 14 N -0.675 5.675 15 C 0.092 3.908 16 H 0.269 0.731 17 H 0.045 0.955 18 H 0.059 0.941 19 H 0.122 0.878 20 H 0.420 0.580 21 H 0.421 0.579 22 H 0.084 0.916 23 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 -0.250 1.007 3.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.562 4.562 8 H 0.086 0.914 9 C 0.004 3.996 10 C -0.040 4.040 11 N -0.291 5.291 12 C 0.231 3.769 13 S -0.616 6.616 14 N -0.305 5.305 15 C -0.034 4.034 16 H 0.079 0.921 17 H 0.063 0.937 18 H 0.077 0.923 19 H 0.139 0.861 20 H 0.258 0.742 21 H 0.259 0.741 22 H 0.103 0.897 23 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.324 -0.653 1.067 3.552 hybrid contribution 0.652 1.452 -0.068 1.593 sum 3.976 0.799 0.999 4.177 Atomic orbital electron populations 1.69804 1.06096 1.27699 1.48805 1.25022 0.95015 0.99794 0.93906 0.86377 0.79738 0.82275 0.78476 1.20318 1.20908 1.19603 1.20838 0.93247 0.88980 1.53121 0.91448 1.19244 0.93256 0.92697 0.94358 1.22659 0.99877 0.81225 1.00211 1.45471 1.23368 1.07707 1.52597 1.21317 0.84320 0.91010 0.80260 1.93384 1.69720 1.14719 1.83773 1.45112 1.18331 1.13712 1.53350 1.22317 0.95805 0.82971 1.02261 0.92124 0.93694 0.92271 0.86066 0.74189 0.74056 0.89734 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.02 11.43 55.43 0.63 -21.39 14 2 C 0.07 1.58 5.31 -17.82 -0.09 1.48 14 3 Si 0.90 18.68 29.54 -169.99 -5.02 13.66 14 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 14 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 14 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 14 7 C -0.52 -12.03 8.57 -34.44 -0.30 -12.32 14 8 H 0.07 1.50 7.75 -52.49 -0.41 1.10 14 9 C 0.02 0.51 2.33 -91.52 -0.21 0.29 14 10 C 0.09 1.69 6.22 -3.96 -0.02 1.66 14 11 N -0.66 -12.26 5.57 -62.29 -0.35 -12.60 14 12 C 0.60 11.57 7.65 -88.07 -0.67 10.89 14 13 S -0.74 -16.59 30.69 -107.50 -3.30 -19.89 14 14 N -0.67 -11.42 5.58 -62.32 -0.35 -11.77 14 15 C 0.09 1.57 6.45 -3.99 -0.03 1.55 14 16 H 0.27 6.43 8.31 -40.82 -0.34 6.09 14 17 H 0.04 1.07 8.14 -51.93 -0.42 0.65 14 18 H 0.06 1.15 8.14 -51.93 -0.42 0.73 14 19 H 0.12 2.64 6.29 -51.93 -0.33 2.31 14 20 H 0.42 7.17 8.71 -40.82 -0.36 6.81 14 21 H 0.42 6.30 8.71 -40.82 -0.36 5.94 14 22 H 0.08 1.30 8.14 -51.93 -0.42 0.88 14 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 14 LS Contribution 212.99 15.07 3.21 3.21 Total: -1.00 -27.26 212.99 -8.77 -36.03 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -2.27 Total: 9.20 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.33 Total: 3.56 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.06 Total: -45.76 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Atomic # 16 Polarization: -16.59 SS G_CDS: -3.30 Total: -19.89 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -27.26 -8.77 -36.03 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982482.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.818 kcal (2) G-P(sol) polarization free energy of solvation -27.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds