Wall clock time and date at job start Mon Mar 30 2020 01:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.53240 * 109.62052 * 299.35843 * 9 7 2 11 11 N 1.46418 * 109.13572 * 184.99229 * 10 9 7 12 12 C 1.34133 * 121.43208 * 28.72445 * 11 10 9 13 13 S 1.71197 * 118.69629 * 179.59914 * 12 11 10 14 14 N 1.34135 * 122.60674 * 359.57963 * 12 11 10 15 15 C 1.46380 * 121.34233 * 0.60969 * 14 12 11 16 16 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 17 17 H 1.08992 * 109.61647 * 59.72431 * 9 7 2 18 18 H 1.09006 * 109.52566 * 304.69762 * 10 9 7 19 19 H 1.08998 * 109.52464 * 64.89111 * 10 9 7 20 20 H 0.96998 * 119.23660 * 208.87636 * 11 10 9 21 21 H 0.97003 * 119.33153 * 180.59221 * 14 12 11 22 22 H 1.08997 * 109.52473 * 211.01475 * 15 14 12 23 23 H 1.09003 * 109.57348 * 90.85505 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 0.3813 -2.5913 1.2578 11 7 -0.2529 -3.9101 1.3075 12 6 0.3256 -4.9858 0.7532 13 16 -0.4730 -6.4962 0.8615 14 7 1.5049 -4.9250 0.1169 15 6 2.2436 -3.6665 0.0012 16 1 -0.4851 0.8401 0.0004 17 1 0.6194 -2.5571 -0.8869 18 1 1.0044 -2.4562 2.1420 19 1 -0.3846 -1.8163 1.2289 20 1 -1.1110 -4.0067 1.7492 21 1 1.8759 -5.7313 -0.2743 22 1 2.8127 -3.6623 -0.9284 23 1 2.9250 -3.5641 0.8459 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259982482.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:06 Heat of formation + Delta-G solvation = -19.975273 kcal Electronic energy + Delta-G solvation = -9615.300571 eV Core-core repulsion = 7780.971894 eV Total energy + Delta-G solvation = -1834.328677 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.93273 -35.74660 -35.33615 -32.67826 -27.56650 -26.60035 -24.58373 -20.87788 -20.17670 -18.54207 -17.72340 -16.82052 -16.29584 -16.18926 -15.27446 -14.64187 -14.52913 -14.04171 -12.86351 -12.79711 -12.48680 -12.19459 -11.88142 -11.57123 -11.26095 -10.63491 -10.02517 -9.01049 -8.99227 -8.24726 -6.38924 0.49267 0.81708 1.45485 1.49945 1.57219 2.10466 2.38614 2.42219 3.09439 4.03825 4.23818 4.44990 4.66758 4.70412 4.82479 5.32867 5.51553 5.72459 5.75962 6.03494 6.08689 6.42137 6.71346 7.33172 8.81966 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.097443 B = 0.010576 C = 0.009831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.278780 B = 2646.888910 C = 2847.455847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.022 3.978 3 Si 0.961 3.039 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.076 0.924 9 C 0.019 3.981 10 C 0.098 3.902 11 N -0.655 5.655 12 C 0.607 3.393 13 S -0.797 6.797 14 N -0.657 5.657 15 C 0.101 3.899 16 H 0.267 0.733 17 H 0.011 0.989 18 H 0.068 0.932 19 H 0.102 0.898 20 H 0.426 0.574 21 H 0.433 0.567 22 H 0.108 0.892 23 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.239 0.051 1.110 5.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.179 4.179 3 Si 0.786 3.214 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.095 0.905 9 C 0.000 4.000 10 C -0.027 4.027 11 N -0.283 5.283 12 C 0.237 3.763 13 S -0.670 6.670 14 N -0.287 5.287 15 C -0.024 4.024 16 H 0.076 0.924 17 H 0.029 0.971 18 H 0.086 0.914 19 H 0.120 0.880 20 H 0.266 0.734 21 H 0.274 0.726 22 H 0.127 0.873 23 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.812 -0.366 1.163 4.964 hybrid contribution 0.219 1.394 -0.129 1.417 sum 5.031 1.028 1.034 5.238 Atomic orbital electron populations 1.69919 1.07277 1.28069 1.50039 1.25714 0.95596 1.02636 0.93956 0.85496 0.78853 0.78932 0.78074 1.20607 1.21437 1.18647 1.21179 0.93830 0.89690 1.52090 0.90548 1.19168 0.93714 0.93878 0.93283 1.22397 0.99257 0.80996 1.00082 1.45364 1.23603 1.07034 1.52290 1.20996 0.84836 0.89888 0.80597 1.93510 1.71221 1.16801 1.85457 1.45076 1.17288 1.14393 1.51940 1.22282 0.94731 0.81089 1.04330 0.92420 0.97051 0.91405 0.88010 0.73448 0.72628 0.87343 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.30 11.43 21.45 0.25 -45.05 14 2 C 0.02 1.01 5.31 84.65 0.45 1.46 14 3 Si 0.96 37.36 29.54 68.60 2.03 39.39 14 4 H -0.28 -10.95 7.11 99.48 0.71 -10.24 14 5 H -0.29 -11.36 7.11 99.48 0.71 -10.66 14 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 14 7 C -0.53 -23.37 8.57 25.60 0.22 -23.15 14 8 H 0.08 3.19 7.75 -2.91 -0.02 3.16 14 9 C 0.02 0.78 2.33 -11.38 -0.03 0.76 14 10 C 0.10 3.77 6.22 86.48 0.54 4.31 14 11 N -0.66 -23.40 5.57 -351.00 -1.96 -25.35 14 12 C 0.61 22.49 7.65 179.46 1.37 23.86 14 13 S -0.80 -34.92 30.69 -56.49 -1.73 -36.66 14 14 N -0.66 -20.57 5.58 -351.09 -1.96 -22.53 14 15 C 0.10 3.13 6.45 86.48 0.56 3.69 14 16 H 0.27 12.77 8.31 -92.71 -0.77 12.00 14 17 H 0.01 0.54 8.14 -2.39 -0.02 0.52 14 18 H 0.07 2.51 8.14 -2.38 -0.02 2.49 14 19 H 0.10 4.41 6.29 -2.39 -0.02 4.39 14 20 H 0.43 14.20 8.71 -92.71 -0.81 13.40 14 21 H 0.43 11.76 8.71 -92.71 -0.81 10.96 14 22 H 0.11 2.92 8.14 -2.39 -0.02 2.91 14 23 H 0.09 2.47 8.14 -2.39 -0.02 2.45 14 Total: -1.00 -56.29 212.99 -0.65 -56.94 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.38 Total: 22.35 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 3.11 Total: 10.92 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -3.67 Total: -92.94 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Atomic # 16 Polarization: -34.92 SS G_CDS: -1.73 Total: -36.66 kcal Total: -56.29 -0.65 -56.94 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982482.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.964 kcal (2) G-P(sol) polarization free energy of solvation -56.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds