Wall clock time and date at job start Mon Mar 30 2020 01:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40025 * 126.19273 * 2 1 4 4 C 1.31312 * 109.10326 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 125.47319 * 180.02562 * 4 3 2 6 6 C 1.38797 * 109.05340 * 359.97438 * 4 3 2 7 7 C 1.37469 * 126.19298 * 179.97438 * 2 1 3 8 8 C 1.40231 * 126.64536 * 359.97438 * 7 2 1 9 9 H 1.07989 * 120.00435 * 0.02562 * 8 7 2 10 10 C 1.40166 * 119.99458 * 180.02562 * 8 7 2 11 11 N 1.30767 * 120.00236 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99750 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47389 * 90.00115 * 12 10 8 14 14 H 1.48504 * 109.46951 * 209.99812 * 12 10 8 15 15 H 1.48499 * 109.46935 * 329.99726 * 12 10 8 16 16 H 1.08999 * 109.46871 * 90.02234 * 1 2 3 17 17 H 1.09000 * 109.47133 * 210.02693 * 1 2 3 18 18 H 1.09008 * 109.47074 * 330.03106 * 1 2 3 19 19 H 1.07995 * 126.23560 * 180.02562 * 6 4 3 20 20 H 0.96996 * 119.99508 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2919 1.1301 0.0000 4 6 3.5470 0.7442 0.0006 5 17 4.9254 1.7995 0.0014 6 6 3.5946 -0.6430 0.0015 7 6 2.2768 -1.1094 0.0005 8 6 1.8630 -2.4493 0.0016 9 1 0.8101 -2.6893 0.0017 10 6 2.8161 -3.4770 0.0025 11 7 4.0911 -3.1864 0.0029 12 14 2.2650 -5.2619 0.0033 13 1 2.1195 -5.7357 -1.3965 14 1 3.2773 -6.0922 0.7041 15 1 0.9602 -5.3767 0.7029 16 1 -0.3633 -0.0004 -1.0277 17 1 -0.3633 -0.8897 0.5143 18 1 -0.3634 0.8903 0.5134 19 1 4.4870 -1.2511 0.0025 20 1 4.7506 -3.8976 0.0031 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260027135.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:30 Heat of formation + Delta-G solvation = 34.217973 kcal Electronic energy + Delta-G solvation = -9224.318226 eV Core-core repulsion = 7254.462744 eV Total energy + Delta-G solvation = -1969.855482 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.93244 -37.41395 -35.65305 -33.41307 -30.89734 -27.41082 -26.84728 -21.82824 -21.19529 -18.95018 -17.53717 -15.96496 -15.85695 -15.45138 -14.43291 -14.18242 -13.80267 -13.57364 -13.00803 -12.87372 -12.48040 -12.25123 -12.16971 -11.67997 -11.27075 -10.79928 -9.74657 -8.92446 -8.58386 -6.60262 0.97043 1.18736 1.45543 1.60955 1.66238 2.20023 2.30174 2.65711 3.26783 4.21374 4.58780 4.71725 5.01441 5.15602 5.28705 5.64240 5.86219 6.33770 6.42632 6.74567 7.08975 7.37042 8.33562 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.049461 B = 0.013979 C = 0.010964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.963000 B = 2002.485973 C = 2553.305687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.433 5.433 3 N -0.402 5.402 4 C 0.123 3.877 5 Cl -0.028 7.028 6 C -0.379 4.379 7 C 0.236 3.764 8 C -0.467 4.467 9 H 0.096 0.904 10 C 0.033 3.967 11 N -0.810 5.810 12 Si 1.009 2.991 13 H -0.262 1.262 14 H -0.268 1.268 15 H -0.252 1.252 16 H 0.065 0.935 17 H 0.090 0.910 18 H 0.083 0.917 19 H 0.154 0.846 20 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 -2.037 0.115 3.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.225 5.225 3 N -0.229 5.229 4 C -0.062 4.062 5 Cl -0.001 7.001 6 C -0.411 4.411 7 C 0.116 3.884 8 C -0.502 4.502 9 H 0.114 0.886 10 C -0.185 4.185 11 N -0.436 5.436 12 Si 0.828 3.172 13 H -0.186 1.186 14 H -0.193 1.193 15 H -0.175 1.175 16 H 0.083 0.917 17 H 0.108 0.892 18 H 0.102 0.898 19 H 0.171 0.829 20 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.659 -0.947 0.121 3.781 hybrid contribution 0.749 -0.912 -0.033 1.181 sum -2.909 -1.860 0.087 3.454 Atomic orbital electron populations 1.21626 0.73937 1.03842 1.02552 1.48636 1.05773 1.02186 1.65876 1.76699 0.99975 1.09991 1.36242 1.22451 0.88591 0.91027 1.04173 1.98236 1.37990 1.66502 1.97368 1.22037 0.98729 0.90287 1.30057 1.19151 0.88709 0.88423 0.92094 1.19102 0.95921 0.88029 1.47181 0.88569 1.26926 0.93990 1.06531 0.91020 1.69779 1.02912 1.36981 1.33925 0.84799 0.79334 0.73565 0.79521 1.18631 1.19287 1.17540 0.91654 0.89186 0.89844 0.82864 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.48 11.27 127.77 1.44 5.92 14 2 N -0.43 -21.83 4.09 -360.76 -1.48 -23.30 14 3 N -0.40 -21.36 12.54 -50.21 -0.63 -21.99 14 4 C 0.12 6.52 7.77 84.90 0.66 7.18 14 5 Cl -0.03 -1.23 29.31 -2.72 -0.08 -1.31 14 6 C -0.38 -21.46 9.74 22.78 0.22 -21.24 14 7 C 0.24 12.91 6.75 39.12 0.26 13.17 14 8 C -0.47 -23.58 9.02 23.22 0.21 -23.37 14 9 H 0.10 4.37 7.21 -2.92 -0.02 4.35 14 10 C 0.03 1.58 5.50 85.32 0.47 2.05 14 11 N -0.81 -40.88 10.30 21.87 0.23 -40.65 14 12 Si 1.01 35.10 29.56 68.60 2.03 37.13 14 13 H -0.26 -8.81 7.11 99.48 0.71 -8.11 14 14 H -0.27 -8.99 7.11 99.48 0.71 -8.29 14 15 H -0.25 -8.31 7.11 99.48 0.71 -7.60 14 16 H 0.06 2.17 8.14 -2.39 -0.02 2.15 14 17 H 0.09 2.99 7.40 -2.39 -0.02 2.97 14 18 H 0.08 2.73 8.14 -2.38 -0.02 2.71 14 19 H 0.15 8.98 5.73 -2.91 -0.02 8.97 14 20 H 0.29 13.12 8.29 -92.71 -0.77 12.35 14 Total: -1.00 -61.50 202.10 4.59 -56.91 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.26 Total: 9.51 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 3.26 Total: -16.29 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.88 Total: -85.95 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 2.03 Total: 37.13 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -61.50 4.59 -56.91 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260027135.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.131 kcal (2) G-P(sol) polarization free energy of solvation -61.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds