Wall clock time and date at job start Mon Mar 30 2020 01:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47362 * 240.00204 * 3 2 1 5 5 H 1.48497 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47220 * 120.00256 * 3 2 1 7 7 C 1.37880 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00512 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99564 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.50914 * 59.91471 * 9 7 2 11 11 C 1.53186 * 109.50404 * 179.97438 * 9 7 2 12 12 O 1.45731 * 109.25162 * 176.46735 * 11 9 7 13 13 C 1.35840 * 114.69756 * 306.58272 * 12 11 9 14 14 O 1.21254 * 121.99012 * 223.31473 * 13 12 11 15 15 C 1.50754 * 116.02415 * 43.30770 * 13 12 11 16 16 O 1.21250 * 121.99053 * 142.22179 * 15 13 12 17 17 O 1.35841 * 116.02421 * 322.19847 * 15 13 12 18 18 H 0.96997 * 119.99757 * 359.97438 * 1 2 3 19 19 H 1.08991 * 109.50784 * 296.40021 * 11 9 7 20 20 H 1.08997 * 109.50310 * 56.53701 * 11 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6227 -2.5567 -0.8893 11 6 2.2458 -3.6641 -0.0018 12 8 1.5136 -4.9213 0.0830 13 6 0.6407 -5.0008 1.1207 14 8 0.5443 -5.9978 1.8041 15 6 -0.2011 -3.7757 1.3723 16 8 -1.3615 -3.8531 1.7152 17 8 0.4179 -2.5800 1.1924 18 1 -0.4850 0.8400 0.0004 19 1 2.8288 -3.6438 -0.9225 20 1 2.9136 -3.5733 0.8548 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260039283.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:49 Heat of formation + Delta-G solvation = -173.982681 kcal Electronic energy + Delta-G solvation = -11381.472652 eV Core-core repulsion = 8929.586996 eV Total energy + Delta-G solvation = -2451.885656 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.041 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.24251 -39.77956 -39.35900 -37.28167 -35.00249 -31.74168 -27.40949 -27.07689 -24.35554 -21.07136 -20.20457 -19.09847 -18.27763 -17.70091 -17.36006 -16.65437 -16.48544 -15.47877 -15.13480 -14.51973 -14.17479 -13.80180 -13.51789 -12.77964 -12.68465 -12.59687 -12.22907 -11.82519 -11.26810 -10.78887 -10.45381 -8.36876 -6.63986 -0.43929 0.99926 1.28963 1.49309 1.50823 1.59351 2.11115 2.33785 2.73022 3.30883 3.79403 4.12839 4.49408 4.81926 5.26895 5.40576 5.55778 5.67972 6.01905 6.13551 6.58567 7.16033 8.70486 Molecular weight = 186.04amu Principal moments of inertia in cm(-1) A = 0.069548 B = 0.013083 C = 0.011500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.504649 B = 2139.632702 C = 2434.199221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.027 3.973 3 Si 0.979 3.021 4 H -0.253 1.253 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.106 0.894 9 C 0.172 3.828 10 H 0.043 0.957 11 C 0.051 3.949 12 O -0.357 6.357 13 C 0.478 3.522 14 O -0.431 6.431 15 C 0.448 3.552 16 O -0.458 6.458 17 O -0.354 6.354 18 H 0.272 0.728 19 H 0.167 0.833 20 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 -1.984 -1.989 7.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.177 1.177 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.124 0.876 9 C 0.121 3.879 10 H 0.060 0.940 11 C -0.020 4.020 12 O -0.276 6.276 13 C 0.314 3.686 14 O -0.311 6.311 15 C 0.285 3.715 16 O -0.341 6.341 17 O -0.274 6.274 18 H 0.081 0.919 19 H 0.184 0.816 20 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.932 -2.385 -1.541 6.577 hybrid contribution -0.188 0.837 0.120 0.866 sum 5.744 -1.548 -1.422 6.117 Atomic orbital electron populations 1.70152 1.08381 1.29123 1.44688 1.26161 0.95547 1.04239 0.91971 0.85283 0.78084 0.76614 0.79798 1.17746 1.21585 1.19009 1.21340 0.94527 0.88598 1.53855 0.87629 1.21747 0.88284 0.96258 0.81583 0.93965 1.24666 0.93127 0.76030 1.08226 1.86990 1.53275 1.43074 1.44262 1.23765 0.79752 0.87316 0.77756 1.90743 1.66221 1.33407 1.40751 1.24140 0.86292 0.86346 0.74683 1.90685 1.16038 1.87084 1.40317 1.87720 1.61695 1.31450 1.46491 0.91903 0.81593 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.27 12.86 21.45 0.28 -47.99 14 2 C 0.03 1.32 5.40 84.66 0.46 1.78 14 3 Si 0.98 37.55 29.54 68.60 2.03 39.58 14 4 H -0.25 -8.98 7.11 99.48 0.71 -8.27 14 5 H -0.29 -11.40 7.11 99.48 0.71 -10.70 14 6 H -0.27 -9.89 7.11 99.48 0.71 -9.18 14 7 C -0.55 -24.94 8.80 25.60 0.23 -24.71 14 8 H 0.11 4.19 7.74 -2.91 -0.02 4.17 14 9 C 0.17 7.45 2.82 29.91 0.08 7.54 14 10 H 0.04 1.97 8.14 -2.39 -0.02 1.95 14 11 C 0.05 1.61 6.43 72.04 0.46 2.07 14 12 O -0.36 -12.43 10.72 -64.08 -0.69 -13.11 14 13 C 0.48 19.09 7.99 71.25 0.57 19.66 14 14 O -0.43 -18.18 18.00 23.53 0.42 -17.76 14 15 C 0.45 20.62 7.98 71.25 0.57 21.19 14 16 O -0.46 -23.19 18.00 23.54 0.42 -22.76 14 17 O -0.35 -17.48 9.79 -64.08 -0.63 -18.10 14 18 H 0.27 14.05 8.31 -92.71 -0.77 13.28 14 19 H 0.17 3.96 8.14 -2.39 -0.02 3.94 14 20 H 0.10 2.88 8.14 -2.39 -0.02 2.86 14 Total: -1.00 -60.04 200.13 5.47 -54.56 By element: Atomic # 1 Polarization: -3.21 SS G_CDS: 1.27 Total: -1.94 kcal Atomic # 6 Polarization: 25.16 SS G_CDS: 2.37 Total: 27.53 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.28 Total: -47.99 kcal Atomic # 8 Polarization: -71.27 SS G_CDS: -0.47 Total: -71.74 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -60.04 5.47 -54.56 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039283.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.419 kcal (2) G-P(sol) polarization free energy of solvation -60.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds