Wall clock time and date at job start Mon Mar 30 2020 02:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00189 * 2 1 4 4 H 1.48501 * 109.47377 * 270.00256 * 3 2 1 5 5 H 1.48504 * 109.47115 * 30.00094 * 3 2 1 6 6 H 1.48500 * 109.47100 * 150.00038 * 3 2 1 7 7 C 1.37872 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00545 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00279 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47696 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.76160 * 305.45340 * 10 9 7 12 12 C 1.54153 * 109.62129 * 184.99648 * 10 9 7 13 13 C 1.46726 * 111.56334 * 162.47232 * 12 10 9 14 14 O 1.44216 * 111.52125 * 59.61975 * 13 12 10 15 15 C 1.40146 * 113.20246 * 280.07064 * 14 13 12 16 16 C 1.54057 * 112.59122 * 93.12905 * 15 14 13 17 17 O 1.40096 * 109.61934 * 65.90181 * 10 9 7 18 18 H 0.97000 * 119.99340 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47462 * 59.99330 * 9 7 2 20 20 H 1.09011 * 109.46811 * 299.99929 * 9 7 2 21 21 H 1.09003 * 109.05506 * 41.94221 * 12 10 9 22 22 H 1.08998 * 109.00614 * 282.97962 * 12 10 9 23 23 H 1.09002 * 109.05792 * 180.12572 * 13 12 10 24 24 H 1.09004 * 109.06120 * 299.11381 * 13 12 10 25 25 H 1.09001 * 108.88346 * 332.32677 * 15 14 13 26 26 H 1.08997 * 108.78703 * 213.87463 * 15 14 13 27 27 H 1.09005 * 108.97473 * 198.29774 * 16 15 14 28 28 H 1.09005 * 108.97561 * 79.59689 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9376 -3.5553 -0.8365 12 6 1.4821 -4.9955 -0.1291 13 6 2.3700 -6.0873 -0.5445 14 8 3.4415 -6.2862 0.4000 15 6 4.4889 -5.3674 0.2483 16 6 4.3287 -4.1324 1.1552 17 8 2.9595 -3.6701 1.2037 18 1 -0.4849 0.8401 0.0004 19 1 0.6246 -2.5563 -0.8919 20 1 0.6240 -2.5575 0.8881 21 1 0.6882 -4.8818 -0.8673 22 1 1.0386 -5.2443 0.8350 23 1 1.7902 -7.0069 -0.6239 24 1 2.7947 -5.8492 -1.5197 25 1 4.5227 -5.0394 -0.7906 26 1 5.4287 -5.8632 0.4912 27 1 4.9607 -3.3295 0.7755 28 1 4.6522 -4.3891 2.1640 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260044703.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:46 Heat of formation + Delta-G solvation = -99.993563 kcal Electronic energy + Delta-G solvation = -11894.446678 eV Core-core repulsion = 9717.435620 eV Total energy + Delta-G solvation = -2177.011058 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.36407 -36.21082 -33.52861 -32.36414 -28.93976 -28.63077 -25.09729 -22.32744 -21.55816 -19.99799 -16.97713 -16.30920 -16.04073 -15.35076 -14.58498 -14.33145 -14.10925 -13.11521 -12.62678 -12.50476 -12.06583 -11.32829 -11.19351 -10.94276 -10.87900 -10.65646 -10.35348 -10.17819 -9.49199 -9.24532 -9.06628 -8.49756 -8.33317 -5.96782 -3.97410 3.33840 3.40089 3.44374 3.99250 4.48451 4.55069 5.13394 5.18077 5.30254 5.40039 5.54604 5.65934 5.71291 5.84370 6.08213 6.13743 6.17269 6.27960 6.73249 6.91610 7.41419 7.55057 7.68670 8.00597 8.32058 8.47010 9.06311 9.64902 11.14932 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064101 B = 0.010883 C = 0.009737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.705319 B = 2572.134710 C = 2874.987493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.104 3.896 11 H 0.041 0.959 12 C -0.187 4.187 13 C 0.063 3.937 14 O -0.373 6.373 15 C 0.030 3.970 16 C 0.034 3.966 17 O -0.363 6.363 18 H 0.260 0.740 19 H 0.030 0.970 20 H 0.026 0.974 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.447 -9.261 -1.485 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.072 0.928 9 C -0.013 4.013 10 C 0.046 3.954 11 H 0.059 0.941 12 C -0.225 4.225 13 C -0.013 4.013 14 O -0.292 6.292 15 C -0.048 4.048 16 C -0.043 4.043 17 O -0.282 6.282 18 H 0.070 0.930 19 H 0.048 0.952 20 H 0.045 0.955 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.103 0.897 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.208 -9.231 -1.183 11.187 hybrid contribution 0.569 1.095 -0.454 1.315 sum 6.777 -8.135 -1.638 10.714 Atomic orbital electron populations 1.69961 1.06008 1.26554 1.51271 1.24995 0.94854 0.99190 0.95527 0.86583 0.79904 0.83503 0.77949 1.20778 1.21210 1.19910 1.21114 0.92925 0.90729 1.49883 0.92814 1.19265 0.93404 0.90642 0.97951 1.22092 0.93455 0.94013 0.85841 0.94126 1.22009 1.00169 0.96964 1.03351 1.21757 0.89184 0.99319 0.90998 1.87694 1.30331 1.52744 1.58393 1.22939 0.91070 0.91428 0.99413 1.23604 0.85624 0.94485 1.00636 1.87548 1.22716 1.85128 1.32762 0.93034 0.95238 0.95514 0.90178 0.90628 0.89707 0.93428 0.93219 0.89706 0.92778 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 15 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 15 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.51 -14.72 8.90 -34.44 -0.31 -15.03 15 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 15 9 C 0.02 0.64 4.65 -27.88 -0.13 0.51 15 10 C 0.10 2.27 2.14 -26.13 -0.06 2.22 15 11 H 0.04 0.86 7.07 -51.93 -0.37 0.49 15 12 C -0.19 -3.37 5.14 -29.13 -0.15 -3.52 15 13 C 0.06 0.96 6.22 34.16 0.21 1.17 15 14 O -0.37 -6.18 10.49 -46.34 -0.49 -6.66 15 15 C 0.03 0.44 6.11 37.71 0.23 0.67 15 16 C 0.03 0.58 7.14 37.71 0.27 0.85 15 17 O -0.36 -8.11 9.68 -46.22 -0.45 -8.56 15 18 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 19 H 0.03 0.80 8.05 -51.93 -0.42 0.38 15 20 H 0.03 0.77 8.14 -51.92 -0.42 0.34 15 21 H 0.08 1.35 7.95 -51.93 -0.41 0.94 15 22 H 0.08 1.43 8.14 -51.93 -0.42 1.00 15 23 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.05 0.66 7.48 -51.93 -0.39 0.27 15 25 H 0.05 0.70 6.75 -51.93 -0.35 0.35 15 26 H 0.08 1.01 8.14 -51.93 -0.42 0.58 15 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 LS Contribution 232.28 15.07 3.50 3.50 Total: -1.00 -31.83 232.28 -5.76 -37.58 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -4.01 Total: -4.67 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -0.03 Total: -11.62 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.93 Total: -15.22 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.83 -5.76 -37.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260044703.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.409 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds