Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00189 * 2 1 4 4 H 1.48501 * 109.47377 * 270.00256 * 3 2 1 5 5 H 1.48504 * 109.47115 * 30.00094 * 3 2 1 6 6 H 1.48500 * 109.47100 * 150.00038 * 3 2 1 7 7 C 1.37872 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00545 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00279 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47696 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.76160 * 305.45340 * 10 9 7 12 12 C 1.54153 * 109.62129 * 184.99648 * 10 9 7 13 13 C 1.46726 * 111.56334 * 162.47232 * 12 10 9 14 14 O 1.44216 * 111.52125 * 59.61975 * 13 12 10 15 15 C 1.40146 * 113.20246 * 280.07064 * 14 13 12 16 16 C 1.54057 * 112.59122 * 93.12905 * 15 14 13 17 17 O 1.40096 * 109.61934 * 65.90181 * 10 9 7 18 18 H 0.97000 * 119.99340 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47462 * 59.99330 * 9 7 2 20 20 H 1.09011 * 109.46811 * 299.99929 * 9 7 2 21 21 H 1.09003 * 109.05506 * 41.94221 * 12 10 9 22 22 H 1.08998 * 109.00614 * 282.97962 * 12 10 9 23 23 H 1.09002 * 109.05792 * 180.12572 * 13 12 10 24 24 H 1.09004 * 109.06120 * 299.11381 * 13 12 10 25 25 H 1.09001 * 108.88346 * 332.32677 * 15 14 13 26 26 H 1.08997 * 108.78703 * 213.87463 * 15 14 13 27 27 H 1.09005 * 108.97473 * 198.29774 * 16 15 14 28 28 H 1.09005 * 108.97561 * 79.59689 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9376 -3.5553 -0.8365 12 6 1.4821 -4.9955 -0.1291 13 6 2.3700 -6.0873 -0.5445 14 8 3.4415 -6.2862 0.4000 15 6 4.4889 -5.3674 0.2483 16 6 4.3287 -4.1324 1.1552 17 8 2.9595 -3.6701 1.2037 18 1 -0.4849 0.8401 0.0004 19 1 0.6246 -2.5563 -0.8919 20 1 0.6240 -2.5575 0.8881 21 1 0.6882 -4.8818 -0.8673 22 1 1.0386 -5.2443 0.8350 23 1 1.7902 -7.0069 -0.6239 24 1 2.7947 -5.8492 -1.5197 25 1 4.5227 -5.0394 -0.7906 26 1 5.4287 -5.8632 0.4912 27 1 4.9607 -3.3295 0.7755 28 1 4.6522 -4.3891 2.1640 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260044703.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = -121.848081 kcal Electronic energy + Delta-G solvation = -11895.394361 eV Core-core repulsion = 9717.435620 eV Total energy + Delta-G solvation = -2177.958741 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.75564 -37.69169 -35.39743 -34.15237 -30.83828 -29.95300 -26.93862 -24.07123 -22.88950 -21.66902 -18.52719 -18.38920 -17.38293 -16.72051 -16.43546 -15.94393 -15.50853 -14.65093 -14.35554 -14.04080 -13.70549 -13.37455 -12.85844 -12.68509 -12.53291 -12.32721 -12.07239 -11.68091 -11.30185 -11.11262 -10.61416 -10.56981 -10.09041 -8.20138 -6.29697 1.38205 1.40528 1.51519 2.40629 2.76312 3.08120 3.18011 3.86319 3.88318 4.11192 4.24628 4.35071 4.47268 4.50740 4.67694 4.76040 4.86692 4.93935 5.14363 5.20337 5.40631 5.49635 5.77971 6.21476 6.24522 6.74456 6.83487 7.37662 8.92010 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064101 B = 0.010883 C = 0.009737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.705319 B = 2572.134710 C = 2874.987493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.111 3.889 11 H 0.047 0.953 12 C -0.178 4.178 13 C 0.062 3.938 14 O -0.386 6.386 15 C 0.030 3.970 16 C 0.023 3.977 17 O -0.400 6.400 18 H 0.264 0.736 19 H 0.015 0.985 20 H -0.010 1.010 21 H 0.088 0.912 22 H 0.060 0.940 23 H 0.114 0.886 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.120 0.880 27 H 0.058 0.942 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.044 -9.719 -2.051 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.072 0.928 9 C -0.011 4.011 10 C 0.053 3.947 11 H 0.065 0.935 12 C -0.216 4.216 13 C -0.013 4.013 14 O -0.305 6.305 15 C -0.048 4.048 16 C -0.053 4.053 17 O -0.320 6.320 18 H 0.073 0.927 19 H 0.033 0.967 20 H 0.008 0.992 21 H 0.106 0.894 22 H 0.079 0.921 23 H 0.132 0.868 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.138 0.862 27 H 0.076 0.924 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.820 -9.706 -1.753 12.586 hybrid contribution 0.071 1.237 -0.238 1.261 sum 7.891 -8.469 -1.992 11.745 Atomic orbital electron populations 1.70091 1.07716 1.27760 1.51968 1.25954 0.95807 1.03283 0.94887 0.85443 0.78525 0.78442 0.78614 1.19326 1.20707 1.19169 1.21482 0.93143 0.92087 1.49991 0.92804 1.19156 0.93949 0.92598 0.95413 1.21822 0.92823 0.93999 0.86074 0.93513 1.21916 1.00621 0.96026 1.03001 1.21851 0.88869 0.99262 0.91348 1.87688 1.30830 1.52914 1.59047 1.23043 0.92041 0.90487 0.99190 1.23923 0.82935 0.95977 1.02509 1.87458 1.25364 1.86125 1.33041 0.92746 0.96703 0.99161 0.89408 0.92115 0.86849 0.91594 0.92427 0.86209 0.92383 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.98 13.29 21.45 0.28 -57.69 15 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 15 3 Si 0.97 45.27 29.54 68.60 2.03 47.30 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 7 C -0.53 -31.13 8.90 25.60 0.23 -30.90 15 8 H 0.05 3.08 7.74 -2.91 -0.02 3.06 15 9 C 0.03 1.42 4.65 29.85 0.14 1.56 15 10 C 0.11 4.84 2.14 30.98 0.07 4.91 15 11 H 0.05 1.95 7.07 -2.39 -0.02 1.93 15 12 C -0.18 -6.27 5.14 29.04 0.15 -6.12 15 13 C 0.06 1.72 6.22 70.04 0.44 2.16 15 14 O -0.39 -11.69 10.49 -129.55 -1.36 -13.05 15 15 C 0.03 0.80 6.11 72.34 0.44 1.24 15 16 C 0.02 0.75 7.14 72.34 0.52 1.27 15 17 O -0.40 -17.88 9.68 -129.12 -1.25 -19.13 15 18 H 0.26 15.31 8.31 -92.71 -0.77 14.54 15 19 H 0.01 0.83 8.05 -2.39 -0.02 0.82 15 20 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 15 21 H 0.09 2.91 7.95 -2.39 -0.02 2.89 15 22 H 0.06 2.30 8.14 -2.39 -0.02 2.28 15 23 H 0.11 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.07 1.60 7.48 -2.38 -0.02 1.59 15 25 H 0.06 1.44 6.75 -2.39 -0.02 1.43 15 26 H 0.12 2.35 8.14 -2.39 -0.02 2.33 15 27 H 0.06 1.82 8.14 -2.38 -0.02 1.80 15 28 H 0.10 2.85 8.14 -2.38 -0.02 2.83 15 Total: -1.00 -68.87 232.28 3.26 -65.61 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: 1.12 Total: 2.51 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 2.44 Total: -25.55 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.28 Total: -57.69 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -2.61 Total: -32.18 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.87 3.26 -65.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260044703.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.237 kcal (2) G-P(sol) polarization free energy of solvation -68.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds