Wall clock time and date at job start Mon Mar 30 2020 02:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86808 * 120.00150 * 2 1 4 4 H 1.48499 * 109.47111 * 239.99727 * 3 2 1 5 5 H 1.48498 * 109.46996 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47279 * 119.99671 * 3 2 1 7 7 C 1.37883 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00065 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99393 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46894 * 179.97438 * 9 7 2 11 11 H 1.08999 * 108.99035 * 53.95815 * 10 9 7 12 12 C 1.46727 * 109.05727 * 172.92476 * 10 9 7 13 13 C 1.54152 * 111.55987 * 180.12109 * 12 10 9 14 14 O 1.40099 * 108.58356 * 282.19952 * 13 12 10 15 15 C 1.44601 * 117.10816 * 93.00879 * 14 13 12 16 16 C 1.54056 * 111.99057 * 318.64306 * 15 14 13 17 17 O 1.40097 * 112.65540 * 318.94850 * 16 15 14 18 18 H 0.97003 * 120.00118 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47422 * 60.00182 * 9 7 2 20 20 H 1.08993 * 109.47321 * 299.99452 * 9 7 2 21 21 H 1.08998 * 109.06020 * 300.65474 * 12 10 9 22 22 H 1.08999 * 109.06177 * 59.58440 * 12 10 9 23 23 H 1.08992 * 109.62042 * 41.93360 * 13 12 10 24 24 H 1.08999 * 109.61395 * 162.47248 * 13 12 10 25 25 H 1.09006 * 108.97588 * 79.28883 * 15 14 13 26 26 H 1.08998 * 108.97419 * 198.07749 * 15 14 13 27 27 H 1.09004 * 108.84191 * 198.13862 * 16 15 14 28 28 H 1.08993 * 108.85082 * 79.77576 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9366 -3.5376 0.8339 12 6 1.5105 -4.9206 0.1714 13 6 2.4607 -6.1343 0.1827 14 8 2.8363 -6.4196 -1.1366 15 6 4.0582 -5.8155 -1.6192 16 6 4.1973 -4.3510 -1.1619 17 8 2.9890 -3.6457 -1.2349 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8903 21 1 0.9632 -4.8882 1.1134 22 1 0.8002 -5.0321 -0.6479 23 1 3.3466 -5.9001 0.7728 24 1 1.9490 -6.9957 0.6120 25 1 4.9079 -6.3862 -1.2443 26 1 4.0630 -5.8474 -2.7087 27 1 4.9339 -3.8536 -1.7929 28 1 4.5521 -4.3360 -0.1314 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260044706.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:47 Heat of formation + Delta-G solvation = -99.478719 kcal Electronic energy + Delta-G solvation = -11865.679392 eV Core-core repulsion = 9688.690660 eV Total energy + Delta-G solvation = -2176.988733 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.35254 -36.24176 -33.75400 -32.28005 -28.85339 -28.53910 -25.18610 -22.30723 -21.28756 -20.35298 -16.97896 -16.27406 -16.05546 -15.27445 -14.76595 -14.43276 -13.73114 -13.38600 -12.71162 -12.41294 -12.02616 -11.43064 -11.23559 -10.99957 -10.75880 -10.60065 -10.26239 -10.06799 -9.64203 -9.20709 -8.92828 -8.74626 -8.32965 -5.95688 -3.96262 3.36584 3.40617 3.43633 3.97641 4.48314 4.50423 5.07136 5.28412 5.36877 5.42258 5.50729 5.53034 5.66063 5.87388 5.99593 6.06675 6.20236 6.34231 6.77653 6.87348 7.51128 7.61240 7.67650 8.01329 8.14214 8.45851 9.07314 9.65957 11.16003 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.068805 B = 0.010456 C = 0.009472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.849805 B = 2677.231904 C = 2955.394845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.092 3.908 11 H 0.044 0.956 12 C -0.178 4.178 13 C 0.066 3.934 14 O -0.386 6.386 15 C 0.035 3.965 16 C 0.028 3.972 17 O -0.347 6.347 18 H 0.261 0.739 19 H 0.027 0.973 20 H 0.031 0.969 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.044 0.956 24 H 0.082 0.918 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.680 -9.697 0.393 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.547 4.547 8 H 0.073 0.927 9 C -0.011 4.011 10 C 0.035 3.965 11 H 0.062 0.938 12 C -0.215 4.215 13 C -0.011 4.011 14 O -0.305 6.305 15 C -0.042 4.042 16 C -0.051 4.051 17 O -0.265 6.265 18 H 0.070 0.930 19 H 0.045 0.955 20 H 0.049 0.951 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.063 0.937 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.348 -9.583 0.122 11.496 hybrid contribution 0.743 0.975 0.400 1.289 sum 7.091 -8.609 0.522 11.165 Atomic orbital electron populations 1.69943 1.06020 1.26676 1.51210 1.25003 0.94847 0.99200 0.95527 0.86638 0.79550 0.83135 0.78545 1.20244 1.21333 1.20369 1.21107 0.92971 0.90683 1.49946 0.92700 1.19232 0.93202 0.90659 0.98038 1.21505 0.94522 0.95746 0.84716 0.93759 1.21997 1.00367 0.95784 1.03397 1.22362 0.97261 0.97674 0.83851 1.87407 1.42472 1.71129 1.29526 1.23804 0.86298 0.93908 1.00161 1.22773 0.89694 0.91858 1.00785 1.87908 1.31812 1.71128 1.35659 0.92978 0.95505 0.95079 0.90401 0.90375 0.93723 0.89974 0.93061 0.89273 0.89796 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.69 15 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 15 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 15 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.51 -14.75 8.86 -34.44 -0.31 -15.05 15 8 H 0.05 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.03 0.68 4.62 -27.88 -0.13 0.55 15 10 C 0.09 1.99 2.09 -29.73 -0.06 1.92 15 11 H 0.04 0.93 7.48 -51.93 -0.39 0.54 15 12 C -0.18 -3.23 4.92 -29.13 -0.14 -3.37 15 13 C 0.07 1.01 6.40 37.76 0.24 1.25 15 14 O -0.39 -6.51 10.28 -46.16 -0.47 -6.98 15 15 C 0.03 0.50 7.14 37.71 0.27 0.77 15 16 C 0.03 0.46 6.11 37.71 0.23 0.69 15 17 O -0.35 -7.63 9.87 -46.15 -0.46 -8.09 15 18 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 19 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.03 0.84 8.10 -51.93 -0.42 0.42 15 21 H 0.08 1.30 8.12 -51.93 -0.42 0.87 15 22 H 0.08 1.53 8.14 -51.93 -0.42 1.10 15 23 H 0.04 0.63 7.07 -51.93 -0.37 0.26 15 24 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 26 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 27 H 0.08 1.24 8.14 -51.93 -0.42 0.81 15 28 H 0.04 0.68 6.75 -51.93 -0.35 0.33 15 LS Contribution 232.32 15.07 3.50 3.50 Total: -1.00 -31.83 232.32 -5.73 -37.57 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -4.03 Total: -4.66 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 0.00 Total: -11.74 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.74 Total: -26.69 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.93 Total: -15.07 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.83 -5.73 -37.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260044706.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.911 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds